AutismKB 2.0

Annotation Detail for C1orf174


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Basic Information Top
Gene Symbol:C1orf174 ( RP13-531C17.2 )
Gene Full Name: chromosome 1 open reading frame 174
Band: 1p36.32
Quick LinksEntrez ID:339448; OMIM: NA; Uniprot ID:CA174_HUMAN; ENSEMBL ID: ENSG00000198912; HGNC ID: 27915
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus6 / 56401210
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult37 / 193912119
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma5 / 8282360
colorectal tumor4 / 11424635
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor8 / 9635983
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal33 / 33603079
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer2 / 10268019
retinoblastoma1 / 4635621
skin tumor4 / 12494932
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites2 / 4001549
bladder0 / 297570 
blood0 / 1234780 
bone3 / 7165541
bone marrow0 / 488010 
brain13 / 110098911
cervix2 / 4817141
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye2 / 2110549
heart3 / 8962633
intestine4 / 23447217
kidney2 / 2117779
larynx0 / 241450 
liver9 / 20774343
lung4 / 33697411
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth2 / 6705229
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta2 / 2808257
prostate2 / 18934510
salivary gland0 / 201550 
skin4 / 21057418
spleen1 / 5395218
stomach2 / 9661920
testis3 / 3304429
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus7 / 23287830
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 222000_at
Cell line Expression level Expression bar
721_B_lymphoblasts165.9
Adipocyte23.05
AdrenalCortex24.6
Adrenalgland20.45
Amygdala26.9
Appendix34
AtrioventricularNode22.65
BDCA4+_DentriticCells58.25
Bonemarrow26
BronchialEpithelialCells28.5
CD105+_Endothelial349.75
CD14+_Monocytes86.8
CD19+_BCells(neg._sel.)153.8
CD33+_Myeloid71.15
CD34+238.15
CD4+_Tcells78
CD56+_NKCells370.35
CD71+_EarlyErythroid58.3
CD8+_Tcells140.05
CardiacMyocytes35.05
Caudatenucleus17.45
Cerebellum17.9
CerebellumPeduncles24.5
CiliaryGanglion24.85
CingulateCortex20.1
Colorectaladenocarcinoma66.5
DorsalRootGanglion19.55
FetalThyroid28.7
Fetalbrain24.55
Fetalliver23.5
Fetallung24.55
GlobusPallidus15.3
Heart32.9
Hypothalamus35.4
Kidney20.65
Leukemia_chronicMyelogenousK-56272.4
Leukemia_promyelocytic-HL-6065.85
Leukemialymphoblastic(MOLT-4)29.15
Liver36.35
Lung53.15
Lymphnode31.75
Lymphoma_burkitts(Daudi)31.65
Lymphoma_burkitts(Raji)66.65
MedullaOblongata20.35
OccipitalLobe20.5
OlfactoryBulb18
Ovary16.3
Pancreas19.1
PancreaticIslet26.05
ParietalLobe15.65
Pituitary20.95
Placenta65.65
Pons17.85
PrefrontalCortex33.25
Prostate32.55
Salivarygland19.9
SkeletalMuscle29.95
Skin21.9
SmoothMuscle28.7
Spinalcord22.55
SubthalamicNucleus22.45
SuperiorCervicalGanglion30.2
TemporalLobe21.7
Testis23
TestisGermCell14.35
TestisIntersitial20.1
TestisLeydigCell23.45
TestisSeminiferousTubule20
Thalamus23.3
Thymus38
Thyroid49.5
Tongue24.4
Tonsil23.6
Trachea20.75
TrigeminalGanglion26.35
Uterus38.95
UterusCorpus21.35
WholeBlood114.2
Wholebrain34.15
colon52.95
pineal_day31.34
pineal_night30.24
retina38.825
small_intestine47.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_11885_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.42 ± 0.49
Basal Forebrain5.44 ± 0.23
Basal Part of Pons5.55 ± 0.3
Cerebellar Cortex5.43 ± 0.3
Cerebellar Nuclei5.57 ± 0.38
Claustrum5.58 ± 0.55
Epithalamus5.6 ± 0.15
Frontal Lobe5.43 ± 0.33
Globus Pallidus5.48 ± 0.49
Hypothalamus5.56 ± 0.37
Insula5.35 ± 0.19
Limbic Lobe5.57 ± 0.28
Mesencephalon5.4 ± 0.45
Myelencephalon5.48 ± 0.32
Occipital Lobe5.51 ± 0.31
Parietal Lobe5.56 ± 0.36
Pontine Tegmentum5.49 ± 0.4
Striatum5.23 ± 0.35
Subthalamus5.65 ± 0.26
Temporal Lobe5.47 ± 0.33
Thalamus5.44 ± 0.31
White Matter5.77 ± 0.65
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
A430005L14RikCBCerebellum19.69
19.86
A430005L14RikCTXCerebral cortex37.35
26.71
A430005L14RikHIPHippocampal region25.38
25.88
A430005L14RikHPFHippocampal formation24.88
23.26
A430005L14RikHYHypothalamus23.71
19.26
A430005L14RikLSXLateral septal complex20.86
15.29
A430005L14RikMBMidbrain21.33
18.11
A430005L14RikMYMedulla18.92
19.54
A430005L14RikOLFOlfactory bulb48.62
40.65
A430005L14RikPPons17.7
17.8
A430005L14RikPALPallidum20.43
16.98
A430005L14RikRHPRetrohippocampal region23.95
19.51
A430005L14RiksAMYStriatum-like amygdalar nuclei20.27
14.11
A430005L14RikSTRStriatum15.63
11
A430005L14RikSTRdStriatum dorsal region9.78
6.98
A430005L14RikSTRvStriatum ventral region33.04
21.68
A430005L14RikTHThalamus26.01
22.15
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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