Annotation Detail for SPOPL
Basic Information Top
| Gene Symbol: | SPOPL ( FLJ53775 ) |
|---|---|
| Gene Full Name: | speckle-type POZ protein-like |
| Band: | 2q22.1 |
| Quick Links | Entrez ID:339745; OMIM: NA; Uniprot ID:SPOPL_HUMAN; ENSEMBL ID: ENSG00000144228; HGNC ID: 27934 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.333297
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 20 / 564012 | 35 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 69 / 1939121 | 35 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 7 / 94178 | 74 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 118 / 3360307 | 35 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 2 / 29757 | 67 | |
| blood | 2 / 123478 | 16 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 29 / 1100989 | 26 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 3 / 89626 | 33 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 6 / 207743 | 28 | |
| lung | 11 / 336974 | 32 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 23 / 91610 | 251 |  |
| mammary gland | 12 / 153271 | 78 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 8 / 280825 | 28 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 3 / 210574 | 14 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 3 / 96619 | 31 | |
| testis | 8 / 330442 | 24 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 11 / 232878 | 47 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P79681
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.28 ± 0.22 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.39 ± 0.19 | |
| Basal Part of Pons | 7.46 ± 0.25 | |
| Cerebellar Cortex | 7.26 ± 0.17 | |
| Cerebellar Nuclei | 7.56 ± 0.29 | |
| Claustrum | 7.21 ± 0.3 | |
| Epithalamus | 7.22 ± 0.36 | |
| Frontal Lobe | 7.32 ± 0.28 | |
| Globus Pallidus | 7.89 ± 0.2 | |
| Hypothalamus | 7.37 ± 0.22 | |
| Insula | 7.24 ± 0.16 | |
| Limbic Lobe | 7.26 ± 0.34 | |
| Mesencephalon | 7.38 ± 0.26 | |
| Myelencephalon | 7.26 ± 0.31 | |
| Occipital Lobe | 7.31 ± 0.3 | |
| Parietal Lobe | 7.34 ± 0.28 | |
| Pontine Tegmentum | 7.28 ± 0.31 | |
| Striatum | 7.15 ± 0.27 | |
| Subthalamus | 7.33 ± 0.14 | |
| Temporal Lobe | 7.23 ± 0.27 | |
| Thalamus | 7.19 ± 0.33 | |
| White Matter | 8.56 ± 0.2 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 4921517N04Rik | CB | Cerebellum | 1.02 | |
| 1.38 | | |||
| 4921517N04Rik | CTX | Cerebral cortex | 0.87 | |
| 1.38 | | |||
| 4921517N04Rik | HIP | Hippocampal region | 1.33 | |
| 1.42 | | |||
| 4921517N04Rik | HPF | Hippocampal formation | 1.02 | |
| 1.08 | | |||
| 4921517N04Rik | HY | Hypothalamus | 0.16 | |
| 0.16 | | |||
| 4921517N04Rik | LSX | Lateral septal complex | 0.22 | |
| 0.31 | | |||
| 4921517N04Rik | MB | Midbrain | 0.83 | |
| 1.17 | | |||
| 4921517N04Rik | MY | Medulla | 0.78 | |
| 1.01 | | |||
| 4921517N04Rik | OLF | Olfactory bulb | 1.22 | |
| 1.09 | | |||
| 4921517N04Rik | P | Pons | 0.38 | |
| 0.57 | | |||
| 4921517N04Rik | PAL | Pallidum | 0.27 | |
| 0.56 | | |||
| 4921517N04Rik | RHP | Retrohippocampal region | 0.44 | |
| 0.59 | | |||
| 4921517N04Rik | sAMY | Striatum-like amygdalar nuclei | 0.16 | |
| 0.26 | | |||
| 4921517N04Rik | STR | Striatum | 0.67 | |
| 0.87 | | |||
| 4921517N04Rik | STRd | Striatum dorsal region | 1.06 | |
| 1.41 | | |||
| 4921517N04Rik | STRv | Striatum ventral region | 0.14 | |
| 0.09 | | |||
| 4921517N04Rik | TH | Thalamus | 0.36 | |
| 0.33 | |