AutismKB 2.0

Annotation Detail for IDI1


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Basic Information Top
Gene Symbol:IDI1 ( IPP1,IPPI1 )
Gene Full Name: isopentenyl-diphosphate delta isomerase 1
Band: 10p15.3
Quick LinksEntrez ID:3422; OMIM: 604055; Uniprot ID:IDI1_HUMAN; ENSEMBL ID: ENSG00000067064; HGNC ID: 5387
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst10 / 62319160
fetus62 / 564012109
neonate2 / 3109764
infant5 / 23620211
juvenile10 / 55556179
adult210 / 1939121108
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor4 / 12794312
bladder carcinoma21 / 174751201
breast (mammary gland) tumor3 / 9417831
cervical tumor2 / 3436658
chondrosarcoma6 / 8282372
colorectal tumor10 / 11424687
esophageal tumor1 / 1729057
gastrointestinal tumor8 / 11936967
germ cell tumor42 / 263845159
glioma9 / 10688384
head and neck tumor3 / 13630222
kidney tumor8 / 68959116
leukemia48 / 95842500
liver tumor30 / 96359311
lung tumor6 / 10312758
lymphoma7 / 7175597
non-neoplasia20 / 97250205
normal424 / 3360307126
ovarian tumor1 / 7668213
pancreatic tumor7 / 10461666
primitive neuroectodermal tumor of the CNS16 / 125680127
prostate cancer5 / 10268048
retinoblastoma0 / 463560 
skin tumor20 / 124949160
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland17 / 33197512
ascites1 / 4001524
bladder26 / 29757873
blood43 / 123478348
bone9 / 71655125
bone marrow24 / 48801491
brain195 / 1100989177
cervix3 / 4817162
connective tissue7 / 14925546
ear0 / 162120 
embryonic tissue29 / 215722134
esophagus1 / 2020949
eye25 / 211054118
heart14 / 89626156
intestine19 / 23447281
kidney17 / 21177780
larynx1 / 2414541
liver45 / 207743216
lung39 / 336974115
lymph4 / 4427090
lymph node9 / 9161098
mammary gland6 / 15327139
mouth2 / 6705229
muscle16 / 107715148
nerve5 / 15768317
ovary5 / 10205148
pancreas16 / 21481274
parathyroid5 / 20539243
pharynx4 / 4132896
pituitary gland1 / 1658560
placenta30 / 280825106
prostate16 / 18934584
salivary gland21 / 201551041
skin31 / 210574147
spleen3 / 5395255
stomach6 / 9661962
testis57 / 330442172
thymus3 / 8113136
thyroid1 / 4747321
tonsil0 / 169990 
trachea4 / 5241376
umbilical cord2 / 13680146
uterus11 / 23287847
vascular7 / 51780135
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 208881_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts1500.55
Adipocyte902.1
AdrenalCortex1194.95
Adrenalgland244.05
Amygdala282.45
Appendix61.85
AtrioventricularNode29.45
BDCA4+_DentriticCells310.1
Bonemarrow29.1
BronchialEpithelialCells1161.35
CD105+_Endothelial124.15
CD14+_Monocytes287.75
CD19+_BCells(neg._sel.)608.75
CD33+_Myeloid428.4
CD34+251.5
CD4+_Tcells196.35
CD56+_NKCells866.25
CD71+_EarlyErythroid78.55
CD8+_Tcells238.7
CardiacMyocytes33.6
Caudatenucleus136.75
Cerebellum50.6
CerebellumPeduncles190.1
CiliaryGanglion71.8
CingulateCortex232
Colorectaladenocarcinoma94.1
DorsalRootGanglion100.6
FetalThyroid60.5
Fetalbrain264.15
Fetalliver616.2
Fetallung382.55
GlobusPallidus158.55
Heart7.55
Hypothalamus599
Kidney18.55
Leukemia_chronicMyelogenousK-562641.35
Leukemia_promyelocytic-HL-60431.1
Leukemialymphoblastic(MOLT-4)586.65
Liver9.25
Lung21.65
Lymphnode100.65
Lymphoma_burkitts(Daudi)464.5
Lymphoma_burkitts(Raji)403.2
MedullaOblongata209.3
OccipitalLobe382.5
OlfactoryBulb167.6
Ovary49.45
Pancreas68.35
PancreaticIslet103.6
ParietalLobe314.15
Pituitary142.5
Placenta42.45
Pons121.15
PrefrontalCortex332.95
Prostate309.75
Salivarygland44.2
SkeletalMuscle184.95
Skin65.65
SmoothMuscle108.45
Spinalcord406.2
SubthalamicNucleus185.55
SuperiorCervicalGanglion61.4
TemporalLobe219.1
Testis39.1
TestisGermCell153.85
TestisIntersitial76.2
TestisLeydigCell96.45
TestisSeminiferousTubule63.75
Thalamus344.7
Thymus45.3
Thyroid73.65
Tongue78.6
Tonsil183.15
Trachea71.75
TrigeminalGanglion71.5
Uterus34.5
UterusCorpus37.05
WholeBlood224.5
Wholebrain175.15
colon106.65
pineal_day449.88
pineal_night507.22
retina240.6
small_intestine84.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P103886
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.8 ± 0.33
Basal Forebrain8.72 ± 0.39
Basal Part of Pons9.03 ± 0.23
Cerebellar Cortex8.77 ± 0.2
Cerebellar Nuclei9.27 ± 0.25
Claustrum8.99 ± 0.32
Epithalamus8.6 ± 0.45
Frontal Lobe9.26 ± 0.29
Globus Pallidus8.51 ± 0.38
Hypothalamus9.22 ± 0.29
Insula8.96 ± 0.36
Limbic Lobe8.97 ± 0.38
Mesencephalon8.99 ± 0.54
Myelencephalon8.98 ± 0.42
Occipital Lobe8.58 ± 0.39
Parietal Lobe8.95 ± 0.34
Pontine Tegmentum9.03 ± 0.36
Striatum8.38 ± 0.48
Subthalamus9.06 ± 0.29
Temporal Lobe9.04 ± 0.26
Thalamus8.99 ± 0.32
White Matter9.5 ± 0.16
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Idi1CBCerebellum3.59
3.68
Idi1CTXCerebral cortex9.85
6.99
Idi1HIPHippocampal region2.33
1.92
Idi1HPFHippocampal formation2.95
2.27
Idi1HYHypothalamus1.39
1.37
Idi1LSXLateral septal complex0.26
0.19
Idi1MBMidbrain5.89
6.93
Idi1MYMedulla7.38
6.98
Idi1OLFOlfactory bulb4.75
4.02
Idi1PPons4.77
5.31
Idi1PALPallidum1.69
1.85
Idi1RHPRetrohippocampal region4.14
2.87
Idi1sAMYStriatum-like amygdalar nuclei3.95
2.9
Idi1STRStriatum1.37
1.18
Idi1STRdStriatum dorsal region1.39
1.23
Idi1STRvStriatum ventral region0.79
0.82
Idi1THThalamus6.55
6.46
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
IDI1_HUMAN_0 0 0 0 AFSVFLFNTENK PRIDE
IDI1_HUMAN_0 0 0 0 NVTLNPDPNEIK PRIDE
IDI1_HUMAN_111 22 111 132 LKAELGIPLEEVPPEEINYLTR PRIDE
IDI1_HUMAN_113 20 113 132 AELGIPLEEVPPEEINYLTR PRIDE
IDI1_HUMAN_137 19 137 155 AQSDGIWGEHEIDYILLVR PRIDE
IDI1_HUMAN_137 20 137 156 AQSDGIWGEHEIDYILLVRK PRIDE
IDI1_HUMAN_157 12 157 168 NVTLNPDPNEIK PRIDE
IDI1_HUMAN_198 9 198 206 IIAATFLFK PRIDE
IDI1_HUMAN_52 12 52 63 AFSVFLFNTENK PRIDE
IDI1_HUMAN_52 18 52 69 AFSVFLFNTENKLLLQQR PRIDE
PAp00001359 20 143 162 CSHPLSNPAELEESDALGVR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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