AutismKB 2.0

Annotation Detail for HNRNPCL1


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Basic Information Top
Gene Symbol:HNRNPCL1 ( HNRPCL1 )
Gene Full Name: heterogeneous nuclear ribonucleoprotein C-like 1
Band: 1p36.21
Quick LinksEntrez ID:343069; OMIM: NA; Uniprot ID:HNRCL_HUMAN; ENSEMBL ID: ENSG00000179172; HGNC ID: 29295
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult0 / 19391210 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal0 / 33603070 
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 216302_at
Cell line Expression level Expression bar
721_B_lymphoblasts16
Adipocyte14.3
AdrenalCortex16.55
Adrenalgland13.65
Amygdala14.7
Appendix21
AtrioventricularNode12.25
BDCA4+_DentriticCells9.25
Bonemarrow15
BronchialEpithelialCells13.45
CD105+_Endothelial13.55
CD14+_Monocytes13.6
CD19+_BCells(neg._sel.)14.75
CD33+_Myeloid16.4
CD34+15.4
CD4+_Tcells13.95
CD56+_NKCells12.4
CD71+_EarlyErythroid13.55
CD8+_Tcells11.9
CardiacMyocytes23
Caudatenucleus12.9
Cerebellum11.65
CerebellumPeduncles19.25
CiliaryGanglion11.25
CingulateCortex15.25
Colorectaladenocarcinoma15.15
DorsalRootGanglion11.55
FetalThyroid13.85
Fetalbrain13.4
Fetalliver13.8
Fetallung10.05
GlobusPallidus10.75
Heart32
Hypothalamus15.2
Kidney14.65
Leukemia_chronicMyelogenousK-56212.85
Leukemia_promyelocytic-HL-6013.25
Leukemialymphoblastic(MOLT-4)11.3
Liver22.85
Lung15.05
Lymphnode12.25
Lymphoma_burkitts(Daudi)20.3
Lymphoma_burkitts(Raji)26.45
MedullaOblongata12.95
OccipitalLobe13.15
OlfactoryBulb11.2
Ovary9.85
Pancreas11.85
PancreaticIslet15.1
ParietalLobe15.65
Pituitary16.7
Placenta13.9
Pons14.85
PrefrontalCortex16.3
Prostate18.55
Salivarygland11.95
SkeletalMuscle28.9
Skin11.5
SmoothMuscle16
Spinalcord16.75
SubthalamicNucleus12.9
SuperiorCervicalGanglion17.7
TemporalLobe13.4
Testis12.15
TestisGermCell11.5
TestisIntersitial11.95
TestisLeydigCell15.6
TestisSeminiferousTubule11.95
Thalamus14.85
Thymus10.15
Thyroid17.65
Tongue18.25
Tonsil13.95
Trachea11.85
TrigeminalGanglion15.55
Uterus11.4
UterusCorpus13.35
WholeBlood14.95
Wholebrain10.6
colon27.4
pineal_day14.94
pineal_night14.78
retina19.2
small_intestine24.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P767422
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.42 ± 0.29
Basal Forebrain9.27 ± 0.26
Basal Part of Pons9.5 ± 0.13
Cerebellar Cortex9.52 ± 0.23
Cerebellar Nuclei9.34 ± 0.29
Claustrum9.24 ± 0.2
Epithalamus9.52 ± 0.31
Frontal Lobe9.35 ± 0.33
Globus Pallidus9.69 ± 0.29
Hypothalamus9.3 ± 0.28
Insula9.47 ± 0.27
Limbic Lobe9.44 ± 0.34
Mesencephalon9.31 ± 0.27
Myelencephalon9.32 ± 0.26
Occipital Lobe9.4 ± 0.24
Parietal Lobe9.34 ± 0.28
Pontine Tegmentum9.35 ± 0.22
Striatum9.35 ± 0.23
Subthalamus9.3 ± 0.15
Temporal Lobe9.35 ± 0.26
Thalamus9.32 ± 0.24
White Matter9.88 ± 0.4
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
HNRCL_HUMAN_17 12 17 28 VFIGNLNTLVVK PRIDE
HNRCL_HUMAN_73 16 73 88 MIASQVVDINLAAEPK PRIDE
HNRCL_HUMAN_89 11 89 99 KVNRGNAGVKR PRIDE
PAp00035416 10 30 39 KSDVEAIFSK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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