Annotation Detail for CCDC18
Basic Information Top
| Gene Symbol: | CCDC18 ( NY-SAR-41,dJ717I23.1 ) |
|---|---|
| Gene Full Name: | coiled-coil domain containing 18 |
| Band: | 1p22.1 |
| Quick Links | Entrez ID:343099; OMIM: NA; Uniprot ID:CCD18_HUMAN; ENSEMBL ID: ENSG00000122483; HGNC ID: 30370 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.728345
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 11 / 564012 | 19 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 11 / 1939121 | 5 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 36 / 3360307 | 10 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 9 / 1100989 | 8 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 1 / 24145 | 41 | |
| liver | 3 / 207743 | 14 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 7 / 91610 | 76 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 15 / 330442 | 45 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_556_PI416573500
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.51 ± 0.68 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.85 ± 0.79 | |
| Basal Part of Pons | 3.31 ± 0.51 | |
| Cerebellar Cortex | 3.46 ± 0.34 | |
| Cerebellar Nuclei | 3.11 ± 0.64 | |
| Claustrum | 3.24 ± 0.55 | |
| Epithalamus | 3.02 ± 0.46 | |
| Frontal Lobe | 3.01 ± 0.59 | |
| Globus Pallidus | 3.72 ± 0.6 | |
| Hypothalamus | 2.97 ± 0.43 | |
| Insula | 3.2 ± 0.58 | |
| Limbic Lobe | 3.26 ± 0.52 | |
| Mesencephalon | 3.19 ± 0.72 | |
| Myelencephalon | 3.12 ± 0.52 | |
| Occipital Lobe | 3.07 ± 0.63 | |
| Parietal Lobe | 3.08 ± 0.59 | |
| Pontine Tegmentum | 3.11 ± 0.62 | |
| Striatum | 3.54 ± 0.67 | |
| Subthalamus | 3.22 ± 0.46 | |
| Temporal Lobe | 3.11 ± 0.63 | |
| Thalamus | 3.11 ± 0.61 | |
| White Matter | 2.93 ± 0.39 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ccdc18 | CB | Cerebellum | 1.96 | |
| 2.19 | | |||
| Ccdc18 | CTX | Cerebral cortex | 3.25 | |
| 2.6 | | |||
| Ccdc18 | HIP | Hippocampal region | 2.64 | |
| 2.3 | | |||
| Ccdc18 | HPF | Hippocampal formation | 1.96 | |
| 1.61 | | |||
| Ccdc18 | HY | Hypothalamus | 0.5 | |
| 0.38 | | |||
| Ccdc18 | LSX | Lateral septal complex | 1.53 | |
| 1.02 | | |||
| Ccdc18 | MB | Midbrain | 1.09 | |
| 1.22 | | |||
| Ccdc18 | MY | Medulla | 1.19 | |
| 1.25 | | |||
| Ccdc18 | OLF | Olfactory bulb | 0.87 | |
| 0.59 | | |||
| Ccdc18 | P | Pons | 1.67 | |
| 1.8 | | |||
| Ccdc18 | PAL | Pallidum | 0.5 | |
| 0.39 | | |||
| Ccdc18 | RHP | Retrohippocampal region | 0.79 | |
| 0.61 | | |||
| Ccdc18 | sAMY | Striatum-like amygdalar nuclei | 0 | |
| 0 | | |||
| Ccdc18 | STR | Striatum | 0.38 | |
| 0.34 | | |||
| Ccdc18 | STRd | Striatum dorsal region | 0.31 | |
| 0.36 | | |||
| Ccdc18 | STRv | Striatum ventral region | 0.29 | |
| 0.19 | | |||
| Ccdc18 | TH | Thalamus | 1.47 | |
| 1.1 | |