AutismKB 2.0

Annotation Detail for IFIT3


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Basic Information Top
Gene Symbol:IFIT3 ( CIG-49,GARG-49,IFI60,IFIT4,IRG2,ISG60,RIG-G )
Gene Full Name: interferon-induced protein with tetratricopeptide repeats 3
Band: 10q23.31
Quick LinksEntrez ID:3437; OMIM: 604650; Uniprot ID:IFIT3_HUMAN; ENSEMBL ID: ENSG00000119917; HGNC ID: 5411
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus1 / 5640121
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult10 / 19391215
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor2 / 3436658
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor1 / 1729057
gastrointestinal tumor6 / 11936950
germ cell tumor2 / 2638457
glioma1 / 1068839
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal15 / 33603074
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood3 / 12347824
bone0 / 716550 
bone marrow0 / 488010 
brain6 / 11009895
cervix2 / 4817141
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus1 / 2020949
eye1 / 2110544
heart0 / 896260 
intestine1 / 2344724
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung2 / 3369745
lymph0 / 442700 
lymph node2 / 9161021
mammary gland1 / 1532716
mouth3 / 6705244
muscle2 / 10771518
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta1 / 2808253
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach3 / 9661931
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus5 / 23287821
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204747_at
Cell line Expression level Expression bar
721_B_lymphoblasts136.05
Adipocyte5.4
AdrenalCortex5.75
Adrenalgland4.7
Amygdala5.9
Appendix5.4
AtrioventricularNode4.35
BDCA4+_DentriticCells6.15
Bonemarrow5.3
BronchialEpithelialCells4.95
CD105+_Endothelial5.45
CD14+_Monocytes6.45
CD19+_BCells(neg._sel.)5.65
CD33+_Myeloid7.1
CD34+6.75
CD4+_Tcells5.7
CD56+_NKCells6.85
CD71+_EarlyErythroid5
CD8+_Tcells5.05
CardiacMyocytes6.7
Caudatenucleus6.2
Cerebellum4.4
CerebellumPeduncles6.15
CiliaryGanglion5.1
CingulateCortex5.5
Colorectaladenocarcinoma5.3
DorsalRootGanglion5.05
FetalThyroid5.15
Fetalbrain5.35
Fetalliver4.7
Fetallung4.45
GlobusPallidus4.05
Heart7.35
Hypothalamus7
Kidney4.4
Leukemia_chronicMyelogenousK-5624.9
Leukemia_promyelocytic-HL-604.55
Leukemialymphoblastic(MOLT-4)4.4
Liver7.1
Lung6.35
Lymphnode4.7
Lymphoma_burkitts(Daudi)13.5
Lymphoma_burkitts(Raji)7.65
MedullaOblongata4.8
OccipitalLobe4.9
OlfactoryBulb5.65
Ovary3.5
Pancreas4.35
PancreaticIslet5.85
ParietalLobe5.75
Pituitary6.35
Placenta5.2
Pons5.65
PrefrontalCortex6.8
Prostate6.3
Salivarygland4.3
SkeletalMuscle6.65
Skin4.3
SmoothMuscle6.1
Spinalcord6.05
SubthalamicNucleus4.9
SuperiorCervicalGanglion7.65
TemporalLobe4.95
Testis4.7
TestisGermCell4.3
TestisIntersitial4.4
TestisLeydigCell5.3
TestisSeminiferousTubule4.5
Thalamus5.55
Thymus4.35
Thyroid6.7
Tongue6.25
Tonsil5.3
Trachea4.55
TrigeminalGanglion6.8
Uterus4.3
UterusCorpus4.95
WholeBlood61.2
Wholebrain4.4
colon5.25
pineal_day6.62
pineal_night6.6
retina6.9
small_intestine5.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P35412
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.52 ± 0.36
Basal Forebrain6.6 ± 0.37
Basal Part of Pons6.37 ± 0.26
Cerebellar Cortex5.76 ± 0.28
Cerebellar Nuclei6.16 ± 0.47
Claustrum5.95 ± 0.7
Epithalamus6.86 ± 0.37
Frontal Lobe6.23 ± 0.54
Globus Pallidus7.53 ± 0.25
Hypothalamus6.77 ± 0.41
Insula6.41 ± 0.43
Limbic Lobe6.08 ± 0.54
Mesencephalon6.45 ± 0.5
Myelencephalon6.49 ± 0.61
Occipital Lobe6.37 ± 0.49
Parietal Lobe6.22 ± 0.47
Pontine Tegmentum6.23 ± 0.69
Striatum6.99 ± 0.4
Subthalamus5.9 ± 0.16
Temporal Lobe6.2 ± 0.5
Thalamus6.58 ± 0.41
White Matter6.82 ± 0.24
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00002977 33 325 357 GLNPLNAYSDLAEFLETECYQTPFNKEVPDAEK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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