Annotation Detail for SERINC2
Basic Information Top
| Gene Symbol: | SERINC2 ( MGC90340,PRO0899,TDE2,TDE2L ) |
|---|---|
| Gene Full Name: | serine incorporator 2 |
| Band: | 1p35.2 |
| Quick Links | Entrez ID:347735; OMIM: NA; Uniprot ID:B4DJK5_HUMAN; ENSEMBL ID: ENSG00000168528; HGNC ID: 23231 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.270655
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 19 / 564012 | 33 | |
| neonate | 2 / 31097 | 64 |  |
| infant | 1 / 23620 | 42 | |
| juvenile | 4 / 55556 | 71 | |
| adult | 232 / 1939121 | 119 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 4 / 17475 | 228 |  |
| breast (mammary gland) tumor | 25 / 94178 | 265 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 17 / 114246 | 148 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 9 / 119369 | 75 | |
| germ cell tumor | 2 / 263845 | 7 |  |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 10 / 95842 | 104 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 9 / 103127 | 87 | |
| lymphoma | 10 / 71755 | 139 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 194 / 3360307 | 57 | |
| ovarian tumor | 7 / 76682 | 91 | |
| pancreatic tumor | 20 / 104616 | 191 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 9 / 102680 | 87 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 11 / 124949 | 88 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 21 / 90257 | 232 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 6 / 40015 | 149 | |
| bladder | 6 / 29757 | 201 | |
| blood | 10 / 123478 | 80 | |
| bone | 6 / 71655 | 83 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 18 / 1100989 | 16 | |
| cervix | 6 / 48171 | 124 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 7 / 211054 | 33 | |
| heart | 3 / 89626 | 33 | |
| intestine | 24 / 234472 | 102 | |
| kidney | 26 / 211777 | 122 | |
| larynx | 2 / 24145 | 82 | |
| liver | 19 / 207743 | 91 | |
| lung | 27 / 336974 | 80 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 56 / 153271 | 365 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 7 / 102051 | 68 | |
| pancreas | 26 / 214812 | 121 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 47 / 280825 | 167 | |
| prostate | 26 / 189345 | 137 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 19 / 210574 | 90 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 4 / 96619 | 41 | |
| testis | 4 / 330442 | 12 | |
| thymus | 9 / 81131 | 110 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 26 / 232878 | 111 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P147331
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.31 ± 1.13 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.95 ± 0.4 | |
| Basal Part of Pons | 1.62 ± 0.56 | |
| Cerebellar Cortex | 1.95 ± 0.9 | |
| Cerebellar Nuclei | 2.13 ± 0.75 | |
| Claustrum | 2.88 ± 1.02 | |
| Epithalamus | 1.63 ± 0.83 | |
| Frontal Lobe | 1.72 ± 0.74 | |
| Globus Pallidus | 2.41 ± 0.54 | |
| Hypothalamus | 1.74 ± 0.68 | |
| Insula | 1.63 ± 0.65 | |
| Limbic Lobe | 1.96 ± 0.72 | |
| Mesencephalon | 2.07 ± 0.89 | |
| Myelencephalon | 1.94 ± 0.76 | |
| Occipital Lobe | 1.94 ± 0.74 | |
| Parietal Lobe | 1.94 ± 0.92 | |
| Pontine Tegmentum | 1.92 ± 0.66 | |
| Striatum | 2.01 ± 0.68 | |
| Subthalamus | 1.89 ± 0.75 | |
| Temporal Lobe | 1.79 ± 0.67 | |
| Thalamus | 1.85 ± 0.65 | |
| White Matter | 2.04 ± 0.11 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Serinc2 | CB | Cerebellum | 28.15 | |
| 38.31 | | |||
| Serinc2 | CTX | Cerebral cortex | 37.2 | |
| 14.07 | | |||
| Serinc2 | HIP | Hippocampal region | 16.69 | |
| 11.3 | | |||
| Serinc2 | HPF | Hippocampal formation | 14.45 | |
| 8.07 | | |||
| Serinc2 | HY | Hypothalamus | 0.23 | |
| 0.13 | | |||
| Serinc2 | LSX | Lateral septal complex | 0.42 | |
| 0.24 | | |||
| Serinc2 | MB | Midbrain | 1.65 | |
| 2.05 | | |||
| Serinc2 | MY | Medulla | 6.25 | |
| 4.45 | | |||
| Serinc2 | OLF | Olfactory bulb | 7.27 | |
| 3.27 | | |||
| Serinc2 | P | Pons | 7.27 | |
| 3.82 | | |||
| Serinc2 | PAL | Pallidum | 0.68 | |
| 1.15 | | |||
| Serinc2 | RHP | Retrohippocampal region | 11.06 | |
| 4.07 | | |||
| Serinc2 | sAMY | Striatum-like amygdalar nuclei | 0.56 | |
| 0.29 | | |||
| Serinc2 | STR | Striatum | 1.92 | |
| 1.19 | | |||
| Serinc2 | STRd | Striatum dorsal region | 2.27 | |
| 1.32 | | |||
| Serinc2 | STRv | Striatum ventral region | 1.79 | |
| 1.37 | | |||
| Serinc2 | TH | Thalamus | 2.33 | |
| 1.06 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00429654 | 28 | 68 | 95 | LPWVCEEGAGIPTVLQGHIDCGSLLGYR | Peptide Atlas |