Annotation Detail for WDR53
Basic Information Top
| Gene Symbol: | WDR53 ( MGC12928,MGC64882 ) |
|---|---|
| Gene Full Name: | WD repeat domain 53 |
| Band: | 3q29 |
| Quick Links | Entrez ID:348793; OMIM: NA; Uniprot ID:WDR53_HUMAN; ENSEMBL ID: ENSG00000185798; HGNC ID: 28786 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.385865
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 8 / 564012 | 14 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 21 / 1939121 | 10 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 25 / 3360307 | 7 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 2 / 123478 | 16 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 3 / 1100989 | 2 | |
| cervix | 4 / 48171 | 83 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 5 / 89626 | 55 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 3 / 96619 | 31 | |
| testis | 11 / 330442 | 33 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_10594_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.1 ± 0.56 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.97 ± 0.61 | |
| Basal Part of Pons | 4.02 ± 0.63 | |
| Cerebellar Cortex | 4.3 ± 0.48 | |
| Cerebellar Nuclei | 3.99 ± 0.56 | |
| Claustrum | 4.02 ± 0.71 | |
| Epithalamus | 3.92 ± 0.23 | |
| Frontal Lobe | 3.91 ± 0.53 | |
| Globus Pallidus | 3.91 ± 0.53 | |
| Hypothalamus | 3.64 ± 0.49 | |
| Insula | 4.09 ± 0.35 | |
| Limbic Lobe | 4.05 ± 0.58 | |
| Mesencephalon | 4.07 ± 0.56 | |
| Myelencephalon | 4.07 ± 0.53 | |
| Occipital Lobe | 4.05 ± 0.49 | |
| Parietal Lobe | 4.05 ± 0.5 | |
| Pontine Tegmentum | 4.03 ± 0.52 | |
| Striatum | 4.15 ± 0.56 | |
| Subthalamus | 3.96 ± 0.74 | |
| Temporal Lobe | 3.97 ± 0.53 | |
| Thalamus | 3.9 ± 0.53 | |
| White Matter | 4.53 ± 0.35 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Wdr53 | CB | Cerebellum | 1.66 | |
| 2.76 | | |||
| Wdr53 | CTX | Cerebral cortex | 4.71 | |
| 3.46 | | |||
| Wdr53 | HIP | Hippocampal region | 6.68 | |
| 6.13 | | |||
| Wdr53 | HPF | Hippocampal formation | 6.68 | |
| 5.62 | | |||
| Wdr53 | HY | Hypothalamus | 2.18 | |
| 1.75 | | |||
| Wdr53 | LSX | Lateral septal complex | 0.27 | |
| 0.19 | | |||
| Wdr53 | MB | Midbrain | 1.37 | |
| 2.34 | | |||
| Wdr53 | MY | Medulla | 2.48 | |
| 4.59 | | |||
| Wdr53 | OLF | Olfactory bulb | 7.73 | |
| 7.27 | | |||
| Wdr53 | P | Pons | 3.5 | |
| 6.17 | | |||
| Wdr53 | PAL | Pallidum | 2.12 | |
| 2.02 | | |||
| Wdr53 | RHP | Retrohippocampal region | 6.86 | |
| 5.06 | | |||
| Wdr53 | sAMY | Striatum-like amygdalar nuclei | 2.75 | |
| 2.41 | | |||
| Wdr53 | STR | Striatum | 1.23 | |
| 0.92 | | |||
| Wdr53 | STRd | Striatum dorsal region | 0.89 | |
| 0.63 | | |||
| Wdr53 | STRv | Striatum ventral region | 1.62 | |
| 1.11 | | |||
| Wdr53 | TH | Thalamus | 1.25 | |
| 0.92 | |