AutismKB 2.0

Annotation Detail for CXCL10


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Basic Information Top
Gene Symbol:CXCL10 ( C7,IFI10,INP10,IP-10,SCYB10,crg-2,gIP-10,mob-1 )
Gene Full Name: chemokine (C-X-C motif) ligand 10
Band: 4q21.1
Quick LinksEntrez ID:3627; OMIM: 147310; Uniprot ID:CXL10_HUMAN; ENSEMBL ID: ENSG00000169245; HGNC ID: 10637
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus4 / 5640127
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult40 / 193912120
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor3 / 9635931
lung tumor0 / 1031270 
lymphoma3 / 7175541
non-neoplasia0 / 972500 
normal44 / 336030713
ovarian tumor4 / 7668252
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor12 / 90257132
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine1 / 2344724
kidney7 / 21177733
larynx0 / 241450 
liver6 / 20774328
lung7 / 33697420
lymph0 / 442700 
lymph node2 / 9161021
mammary gland5 / 15327132
mouth0 / 670520 
muscle1 / 1077159
nerve1 / 1576863
ovary5 / 10205148
pancreas0 / 2148120 
parathyroid5 / 20539243
pharynx6 / 41328145
pituitary gland0 / 165850 
placenta5 / 28082517
prostate2 / 18934510
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach7 / 9661972
testis2 / 3304426
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus17 / 23287872
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204533_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.85
Adipocyte12
AdrenalCortex12.95
Adrenalgland9.65
Amygdala10.95
Appendix26.5
AtrioventricularNode12.9
BDCA4+_DentriticCells7.85
Bonemarrow10.6
BronchialEpithelialCells8.15
CD105+_Endothelial10.6
CD14+_Monocytes11.65
CD19+_BCells(neg._sel.)8.1
CD33+_Myeloid12.55
CD34+9.35
CD4+_Tcells7.9
CD56+_NKCells9.6
CD71+_EarlyErythroid10.15
CD8+_Tcells7.85
CardiacMyocytes18.1
Caudatenucleus9.85
Cerebellum12.25
CerebellumPeduncles12.25
CiliaryGanglion11.45
CingulateCortex11
Colorectaladenocarcinoma9.1
DorsalRootGanglion14.5
FetalThyroid11.8
Fetalbrain194.35
Fetalliver10.75
Fetallung10.55
GlobusPallidus9.15
Heart12.4
Hypothalamus10
Kidney15.1
Leukemia_chronicMyelogenousK-5629.9
Leukemia_promyelocytic-HL-6023.95
Leukemialymphoblastic(MOLT-4)8.4
Liver17.7
Lung12.1
Lymphnode42.95
Lymphoma_burkitts(Daudi)211.55
Lymphoma_burkitts(Raji)14.55
MedullaOblongata10.5
OccipitalLobe8.05
OlfactoryBulb7.6
Ovary12.7
Pancreas8.7
PancreaticIslet12
ParietalLobe13.05
Pituitary25.15
Placenta12.65
Pons16.4
PrefrontalCortex11.15
Prostate13.1
Salivarygland32.5
SkeletalMuscle12.3
Skin11.45
SmoothMuscle12.1
Spinalcord11.6
SubthalamicNucleus9.4
SuperiorCervicalGanglion19.35
TemporalLobe10.25
Testis9.25
TestisGermCell9.25
TestisIntersitial9.7
TestisLeydigCell11.45
TestisSeminiferousTubule10.45
Thalamus9.45
Thymus13.7
Thyroid11.4
Tongue11.9
Tonsil16.55
Trachea10.35
TrigeminalGanglion23.05
Uterus8.15
UterusCorpus8.95
WholeBlood11.2
Wholebrain8.65
colon10.95
pineal_day11.48
pineal_night10.58
retina11.825
small_intestine9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_16036_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.13 ± 0.97
Basal Forebrain1.68 ± 0.18
Basal Part of Pons1.44 ± 0.48
Cerebellar Cortex1.48 ± 0.59
Cerebellar Nuclei1.99 ± 0.66
Claustrum2.63 ± 0.87
Epithalamus1.63 ± 0.85
Frontal Lobe1.63 ± 0.67
Globus Pallidus2.69 ± 0.54
Hypothalamus1.69 ± 0.63
Insula1.5 ± 0.49
Limbic Lobe1.74 ± 0.69
Mesencephalon1.92 ± 0.7
Myelencephalon1.76 ± 0.67
Occipital Lobe1.84 ± 0.7
Parietal Lobe1.72 ± 0.72
Pontine Tegmentum1.81 ± 0.72
Striatum2.09 ± 0.7
Subthalamus1.92 ± 0.65
Temporal Lobe1.61 ± 0.6
Thalamus1.84 ± 0.65
White Matter1.98 ± 0.3
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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