AutismKB 2.0

Annotation Detail for ITGA9


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Basic Information Top
Gene Symbol:ITGA9 ( ALPHA-RLC,ITGA4L,RLC )
Gene Full Name: integrin, alpha 9
Band: 3p22.2
Quick LinksEntrez ID:3680; OMIM: 603963; Uniprot ID:ITA9_HUMAN; ENSEMBL ID: ENSG00000144668; HGNC ID: 6145
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus29 / 56401251
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult59 / 193912130
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor5 / 12794390
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor3 / 26384511
glioma0 / 1068830 
head and neck tumor5 / 13630236
kidney tumor1 / 6895914
leukemia6 / 9584262
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal94 / 336030727
ovarian tumor2 / 7668226
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland6 / 33197180
ascites0 / 400150 
bladder0 / 297570 
blood5 / 12347840
bone1 / 7165513
bone marrow0 / 488010 
brain29 / 110098926
cervix0 / 481710 
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye4 / 21105418
heart8 / 8962689
intestine5 / 23447221
kidney4 / 21177718
larynx1 / 2414541
liver1 / 2077434
lung2 / 3369745
lymph0 / 442700 
lymph node1 / 9161010
mammary gland2 / 15327113
mouth1 / 6705214
muscle6 / 10771555
nerve0 / 157680 
ovary2 / 10205119
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta6 / 28082521
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen1 / 5395218
stomach2 / 9661920
testis10 / 33044230
thymus0 / 811310 
thyroid4 / 4747384
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus12 / 23287851
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206009_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.25
Adipocyte4.8
AdrenalCortex4.5
Adrenalgland3.7
Amygdala4.45
Appendix4.25
AtrioventricularNode3.25
BDCA4+_DentriticCells4.5
Bonemarrow4.2
BronchialEpithelialCells4.15
CD105+_Endothelial4.25
CD14+_Monocytes4.45
CD19+_BCells(neg._sel.)4.5
CD33+_Myeloid5.35
CD34+5.3
CD4+_Tcells4.45
CD56+_NKCells5
CD71+_EarlyErythroid3.9
CD8+_Tcells4.05
CardiacMyocytes5.55
Caudatenucleus3.8
Cerebellum3.65
CerebellumPeduncles4.9
CiliaryGanglion3.15
CingulateCortex4.4
Colorectaladenocarcinoma4.2
DorsalRootGanglion3.55
FetalThyroid5
Fetalbrain4.15
Fetalliver3.65
Fetallung3.55
GlobusPallidus3.2
Heart5.65
Hypothalamus4.6
Kidney3.6
Leukemia_chronicMyelogenousK-5623.8
Leukemia_promyelocytic-HL-603.75
Leukemialymphoblastic(MOLT-4)3.35
Liver5.7
Lung4.6
Lymphnode3.6
Lymphoma_burkitts(Daudi)5.45
Lymphoma_burkitts(Raji)5.95
MedullaOblongata4.65
OccipitalLobe3.8
OlfactoryBulb3.35
Ovary2.9
Pancreas3.4
PancreaticIslet4.5
ParietalLobe4.55
Pituitary4.95
Placenta4.35
Pons4.1
PrefrontalCortex7.55
Prostate4.9
Salivarygland3.45
SkeletalMuscle5.25
Skin3.3
SmoothMuscle4.75
Spinalcord4.55
SubthalamicNucleus4.5
SuperiorCervicalGanglion4.85
TemporalLobe4.7
Testis3.6
TestisGermCell5.4
TestisIntersitial5
TestisLeydigCell4.35
TestisSeminiferousTubule7.75
Thalamus4.35
Thymus3.35
Thyroid5.3
Tongue4.2
Tonsil4.1
Trachea3.5
TrigeminalGanglion4.4
Uterus3.4
UterusCorpus3.85
WholeBlood4.55
Wholebrain3.6
colon4.25
pineal_day5.28
pineal_night5.14
retina5.525
small_intestine5.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P51166
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.74 ± 0.58
Basal Forebrain4.33 ± 0.36
Basal Part of Pons4.23 ± 0.27
Cerebellar Cortex4.34 ± 0.65
Cerebellar Nuclei4.01 ± 0.46
Claustrum4.61 ± 0.66
Epithalamus4.11 ± 0.73
Frontal Lobe4.58 ± 0.55
Globus Pallidus4.17 ± 0.52
Hypothalamus4.03 ± 0.39
Insula4.62 ± 0.67
Limbic Lobe4.81 ± 0.66
Mesencephalon4.51 ± 0.6
Myelencephalon4.48 ± 0.56
Occipital Lobe4.74 ± 0.54
Parietal Lobe4.83 ± 0.59
Pontine Tegmentum4.7 ± 0.79
Striatum4.56 ± 0.82
Subthalamus3.88 ± 0.89
Temporal Lobe4.71 ± 0.57
Thalamus4.47 ± 0.66
White Matter3.42 ± 0.82
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Itga9CBCerebellum3.04
4
Itga9CTXCerebral cortex1.46
1.49
Itga9HIPHippocampal region0.84
0.83
Itga9HPFHippocampal formation0.8
0.8
Itga9HYHypothalamus0.24
0.25
Itga9LSXLateral septal complex0.26
0.28
Itga9MBMidbrain1.45
1.56
Itga9MYMedulla5.3
6.14
Itga9OLFOlfactory bulb2.86
1.93
Itga9PPons3.11
3.7
Itga9PALPallidum0.17
0.18
Itga9RHPRetrohippocampal region0.65
0.7
Itga9sAMYStriatum-like amygdalar nuclei1.02
0.88
Itga9STRStriatum6.87
4.78
Itga9STRdStriatum dorsal region9.4
6.58
Itga9STRvStriatum ventral region5.91
3.96
Itga9THThalamus1.82
1.67
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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