AutismKB 2.0

Annotation Detail for JARID2


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Basic Information Top
Gene Symbol:JARID2 ( JMJ )
Gene Full Name: jumonji, AT rich interactive domain 2
Band: 6p22.3
Quick LinksEntrez ID:3720; OMIM: 601594; Uniprot ID:JARD2_HUMAN; ENSEMBL ID: ENSG00000008083; HGNC ID: 6196
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst8 / 62319128
fetus20 / 56401235
neonate0 / 310970 
infant1 / 2362042
juvenile1 / 5555617
adult62 / 193912131
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor5 / 9417853
cervical tumor2 / 3436658
chondrosarcoma3 / 8282336
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor41 / 263845155
glioma1 / 1068839
head and neck tumor7 / 13630251
kidney tumor2 / 6895929
leukemia6 / 9584262
liver tumor0 / 963590 
lung tumor2 / 10312719
lymphoma2 / 7175527
non-neoplasia1 / 9725010
normal126 / 336030737
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS8 / 12568063
prostate cancer0 / 1026800 
retinoblastoma4 / 4635686
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites1 / 4001524
bladder1 / 2975733
blood7 / 12347856
bone0 / 716550 
bone marrow8 / 48801163
brain39 / 110098935
cervix5 / 48171103
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue20 / 21572292
esophagus0 / 202090 
eye8 / 21105437
heart2 / 8962622
intestine5 / 23447221
kidney5 / 21177723
larynx0 / 241450 
liver3 / 20774314
lung14 / 33697441
lymph1 / 4427022
lymph node3 / 9161032
mammary gland6 / 15327139
mouth8 / 67052119
muscle3 / 10771527
nerve0 / 157680 
ovary2 / 10205119
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta10 / 28082535
prostate3 / 18934515
salivary gland0 / 201550 
skin2 / 2105749
spleen0 / 539520 
stomach0 / 966190 
testis17 / 33044251
thymus4 / 8113149
thyroid1 / 4747321
tonsil0 / 169990 
trachea5 / 5241395
umbilical cord0 / 136800 
uterus5 / 23287821
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203298_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts12.85
Adipocyte4.4
AdrenalCortex4.8
Adrenalgland3.85
Amygdala5
Appendix4.8
AtrioventricularNode3.45
BDCA4+_DentriticCells27.1
Bonemarrow4.7
BronchialEpithelialCells5.5
CD105+_Endothelial18.4
CD14+_Monocytes32.5
CD19+_BCells(neg._sel.)47.6
CD33+_Myeloid62.55
CD34+93.95
CD4+_Tcells16.95
CD56+_NKCells43.05
CD71+_EarlyErythroid14.05
CD8+_Tcells18.1
CardiacMyocytes5.8
Caudatenucleus4.2
Cerebellum11.05
CerebellumPeduncles5.35
CiliaryGanglion3.35
CingulateCortex4.85
Colorectaladenocarcinoma4.65
DorsalRootGanglion3.5
FetalThyroid4.45
Fetalbrain6.85
Fetalliver4.25
Fetallung3.95
GlobusPallidus3.4
Heart6
Hypothalamus5.35
Kidney3.75
Leukemia_chronicMyelogenousK-5626.15
Leukemia_promyelocytic-HL-604.2
Leukemialymphoblastic(MOLT-4)21.75
Liver6.2
Lung5.2
Lymphnode4.25
Lymphoma_burkitts(Daudi)5.9
Lymphoma_burkitts(Raji)6.5
MedullaOblongata4.3
OccipitalLobe4.25
OlfactoryBulb3.65
Ovary3.15
Pancreas3.8
PancreaticIslet4.95
ParietalLobe4.9
Pituitary5.35
Placenta4.95
Pons4.45
PrefrontalCortex6.1
Prostate5.55
Salivarygland3.7
SkeletalMuscle5.2
Skin3.55
SmoothMuscle5.35
Spinalcord5.05
SubthalamicNucleus4.2
SuperiorCervicalGanglion5.25
TemporalLobe4.25
Testis4.2
TestisGermCell8.05
TestisIntersitial5.65
TestisLeydigCell4.7
TestisSeminiferousTubule5.95
Thalamus4.8
Thymus10.5
Thyroid6
Tongue4.65
Tonsil4.6
Trachea3.95
TrigeminalGanglion4.6
Uterus3.85
UterusCorpus4.25
WholeBlood23.5
Wholebrain4.1
colon4.7
pineal_day25.48
pineal_night27.7
retina6.575
small_intestine4.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_11315_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.26 ± 0.32
Basal Forebrain8.35 ± 0.22
Basal Part of Pons8.08 ± 0.33
Cerebellar Cortex8.66 ± 0.24
Cerebellar Nuclei8.19 ± 0.21
Claustrum8.29 ± 0.41
Epithalamus7.92 ± 0.37
Frontal Lobe8.04 ± 0.35
Globus Pallidus8.24 ± 0.36
Hypothalamus8.03 ± 0.35
Insula8.01 ± 0.28
Limbic Lobe8.2 ± 0.42
Mesencephalon8.26 ± 0.35
Myelencephalon8.24 ± 0.4
Occipital Lobe8.68 ± 0.48
Parietal Lobe8.29 ± 0.31
Pontine Tegmentum8.3 ± 0.37
Striatum8.39 ± 0.5
Subthalamus7.91 ± 0.37
Temporal Lobe8.06 ± 0.34
Thalamus8.38 ± 0.36
White Matter8.67 ± 0.23
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00526108 19 263 281 EQASANHPAAAPSTGSSAK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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