AutismKB 2.0

Annotation Detail for KAL1


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Basic Information Top
Gene Symbol:KAL1 ( ADMLX,HHA,KAL,KALIG-1,KMS )
Gene Full Name: Kallmann syndrome 1 sequence
Band: Xp22.32
Quick LinksEntrez ID:3730; OMIM: 308700; Uniprot ID:KALM_HUMAN; ENSEMBL ID: ENSG00000011201; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst6 / 6231996
fetus18 / 56401231
neonate1 / 3109732
infant0 / 236200 
juvenile1 / 5555617
adult65 / 193912133
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor5 / 26384518
glioma3 / 10688328
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia3 / 9725030
normal83 / 336030724
ovarian tumor2 / 7668226
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain11 / 11009899
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue17 / 21572278
esophagus0 / 202090 
eye7 / 21105433
heart1 / 8962611
intestine2 / 2344728
kidney3 / 21177714
larynx0 / 241450 
liver0 / 2077430 
lung15 / 33697444
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary2 / 10205119
pancreas0 / 2148120 
parathyroid3 / 20539146
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate8 / 18934542
salivary gland2 / 2015599
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis34 / 330442102
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord1 / 1368073
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205206_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.1
Adipocyte4.1
AdrenalCortex4.75
Adrenalgland3.8
Amygdala102.25
Appendix10.65
AtrioventricularNode3.65
BDCA4+_DentriticCells4.35
Bonemarrow4.4
BronchialEpithelialCells4.05
CD105+_Endothelial4.15
CD14+_Monocytes4.6
CD19+_BCells(neg._sel.)4.65
CD33+_Myeloid5.75
CD34+5.75
CD4+_Tcells4.75
CD56+_NKCells4.8
CD71+_EarlyErythroid5.3
CD8+_Tcells3.7
CardiacMyocytes5.9
Caudatenucleus38.85
Cerebellum3.6
CerebellumPeduncles6.8
CiliaryGanglion3.7
CingulateCortex6.7
Colorectaladenocarcinoma4.35
DorsalRootGanglion5.6
FetalThyroid8.3
Fetalbrain201.95
Fetalliver3.65
Fetallung26.7
GlobusPallidus3.6
Heart5.85
Hypothalamus156.2
Kidney3.55
Leukemia_chronicMyelogenousK-5623.7
Leukemia_promyelocytic-HL-603.8
Leukemialymphoblastic(MOLT-4)3.6
Liver5.85
Lung5.9
Lymphnode3.85
Lymphoma_burkitts(Daudi)5.4
Lymphoma_burkitts(Raji)6.05
MedullaOblongata8.4
OccipitalLobe28.05
OlfactoryBulb7.5
Ovary2.95
Pancreas3.6
PancreaticIslet4.7
ParietalLobe5.7
Pituitary5
Placenta4.4
Pons6.4
PrefrontalCortex14.8
Prostate5.25
Salivarygland3.5
SkeletalMuscle5.8
Skin3.55
SmoothMuscle4.95
Spinalcord287.15
SubthalamicNucleus4.95
SuperiorCervicalGanglion5.4
TemporalLobe5.6
Testis3.7
TestisGermCell56.4
TestisIntersitial4.4
TestisLeydigCell6.45
TestisSeminiferousTubule4.15
Thalamus6.7
Thymus3.45
Thyroid10.6
Tongue4.25
Tonsil4.2
Trachea12.7
TrigeminalGanglion6.2
Uterus3.6
UterusCorpus4.6
WholeBlood4.45
Wholebrain9.2
colon4.2
pineal_day13.58
pineal_night10.52
retina22.825
small_intestine4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P175799
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.15 ± 0.99
Basal Forebrain1.69 ± 0.19
Basal Part of Pons1.36 ± 0.29
Cerebellar Cortex1.64 ± 0.87
Cerebellar Nuclei1.97 ± 0.75
Claustrum2.59 ± 0.84
Epithalamus1.42 ± 0.76
Frontal Lobe1.55 ± 0.64
Globus Pallidus2.16 ± 0.38
Hypothalamus1.81 ± 0.71
Insula1.55 ± 0.49
Limbic Lobe1.76 ± 0.66
Mesencephalon1.89 ± 0.87
Myelencephalon1.74 ± 0.7
Occipital Lobe1.89 ± 0.9
Parietal Lobe1.74 ± 0.72
Pontine Tegmentum1.76 ± 0.53
Striatum1.79 ± 0.45
Subthalamus1.84 ± 0.64
Temporal Lobe1.59 ± 0.64
Thalamus1.68 ± 0.6
White Matter2.22 ± 0.29
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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