Annotation Detail for ATP9B
Basic Information Top
| Gene Symbol: | ATP9B ( ATPASEP,ATPIIB,DKFZp686H2093,FLJ46612,MGC150650,MGC150651,MGC61572,NEO1L ) |
|---|---|
| Gene Full Name: | ATPase, class II, type 9B |
| Band: | 18q23 |
| Quick Links | Entrez ID:374868; OMIM: NA; Uniprot ID:ATP9B_HUMAN; ENSEMBL ID: ENSG00000166377; HGNC ID: 13541 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.465475
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 10 / 564012 | 17 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 79 / 1939121 | 40 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 8 / 114246 | 70 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 2 / 263845 | 7 |  |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 87 / 3360307 | 25 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 29 / 102680 | 282 |  |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 11 / 1100989 | 9 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 0 / 89626 | 0 | |
| intestine | 11 / 234472 | 46 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 14 / 153271 | 91 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 30 / 189345 | 158 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 5 / 96619 | 51 | |
| testis | 15 / 330442 | 45 | |
| thymus | 5 / 81131 | 61 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P10500
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.27 ± 0.42 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.2 ± 0.28 | |
| Basal Part of Pons | 5.27 ± 0.51 | |
| Cerebellar Cortex | 5.88 ± 0.22 | |
| Cerebellar Nuclei | 5.08 ± 0.64 | |
| Claustrum | 5.3 ± 0.57 | |
| Epithalamus | 4.96 ± 0.6 | |
| Frontal Lobe | 5.09 ± 0.48 | |
| Globus Pallidus | 4.95 ± 0.37 | |
| Hypothalamus | 4.59 ± 0.56 | |
| Insula | 5.3 ± 0.38 | |
| Limbic Lobe | 5.64 ± 0.68 | |
| Mesencephalon | 5.26 ± 0.57 | |
| Myelencephalon | 5.29 ± 0.57 | |
| Occipital Lobe | 6.02 ± 0.58 | |
| Parietal Lobe | 5.37 ± 0.45 | |
| Pontine Tegmentum | 5.21 ± 0.57 | |
| Striatum | 4.81 ± 0.42 | |
| Subthalamus | 4.94 ± 0.76 | |
| Temporal Lobe | 5.4 ± 0.54 | |
| Thalamus | 5.25 ± 0.45 | |
| White Matter | 6.89 ± 0.18 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Atp9b | CB | Cerebellum | 1.38 | |
| 1.41 | | |||
| Atp9b | CTX | Cerebral cortex | 7.95 | |
| 5.59 | | |||
| Atp9b | HIP | Hippocampal region | 5.46 | |
| 4.84 | | |||
| Atp9b | HPF | Hippocampal formation | 5.45 | |
| 4.35 | | |||
| Atp9b | HY | Hypothalamus | 0.53 | |
| 0.43 | | |||
| Atp9b | LSX | Lateral septal complex | 0.55 | |
| 0.43 | | |||
| Atp9b | MB | Midbrain | 0.91 | |
| 1.01 | | |||
| Atp9b | MY | Medulla | 3.63 | |
| 4.3 | | |||
| Atp9b | OLF | Olfactory bulb | 3.81 | |
| 2.67 | | |||
| Atp9b | P | Pons | 1.57 | |
| 2.02 | | |||
| Atp9b | PAL | Pallidum | 1.03 | |
| 0.87 | | |||
| Atp9b | RHP | Retrohippocampal region | 5.76 | |
| 3.95 | | |||
| Atp9b | sAMY | Striatum-like amygdalar nuclei | 0.97 | |
| 0.98 | | |||
| Atp9b | STR | Striatum | 0.47 | |
| 0.41 | | |||
| Atp9b | STRd | Striatum dorsal region | 0.35 | |
| 0.3 | | |||
| Atp9b | STRv | Striatum ventral region | 0.48 | |
| 0.37 | | |||
| Atp9b | TH | Thalamus | 1.39 | |
| 1.29 | |