Annotation Detail for SBSN
Basic Information Top
| Gene Symbol: | SBSN ( MGC75533,UNQ698 ) |
|---|---|
| Gene Full Name: | suprabasin |
| Band: | 19q13.13 |
| Quick Links | Entrez ID:374897; OMIM: 609969; Uniprot ID:SBSN_HUMAN; ENSEMBL ID: ENSG00000189001; HGNC ID: 24950 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.433484
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 4 / 564012 | 7 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 27 / 1939121 | 13 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 |  |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 15 / 136302 | 110 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 44 / 3360307 | 13 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 2 / 29757 | 67 | |
| blood | 0 / 123478 | 0 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 0 / 1100989 | 0 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 0 / 211054 | 0 | |
| heart | 3 / 89626 | 33 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 5 / 24145 | 207 |  |
| liver | 0 / 207743 | 0 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 9 / 67052 | 134 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 4 / 41328 | 96 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 35 / 210574 | 166 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_1_PI416573500
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.6 ± 1.07 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.68 ± 0.69 | |
| Basal Part of Pons | 2.39 ± 0.74 | |
| Cerebellar Cortex | 2.73 ± 0.66 | |
| Cerebellar Nuclei | 2.7 ± 0.55 | |
| Claustrum | 2.66 ± 0.74 | |
| Epithalamus | 1.44 ± 0.89 | |
| Frontal Lobe | 2.14 ± 0.87 | |
| Globus Pallidus | 2.86 ± 0.9 | |
| Hypothalamus | 1.97 ± 0.95 | |
| Insula | 1.98 ± 0.63 | |
| Limbic Lobe | 2.28 ± 0.78 | |
| Mesencephalon | 2.41 ± 0.84 | |
| Myelencephalon | 2.27 ± 0.77 | |
| Occipital Lobe | 2.6 ± 0.84 | |
| Parietal Lobe | 2.29 ± 0.92 | |
| Pontine Tegmentum | 2.38 ± 1.02 | |
| Striatum | 3.36 ± 0.95 | |
| Subthalamus | 1.95 ± 0.79 | |
| Temporal Lobe | 2.1 ± 0.72 | |
| Thalamus | 2.2 ± 0.8 | |
| White Matter | 1.75 ± 0.6 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sbsn | CB | Cerebellum | 16.19 | |
| 19.46 | | |||
| Sbsn | CTX | Cerebral cortex | 23.19 | |
| 15.01 | | |||
| Sbsn | HIP | Hippocampal region | 11.75 | |
| 9.97 | | |||
| Sbsn | HPF | Hippocampal formation | 17.82 | |
| 13.58 | | |||
| Sbsn | HY | Hypothalamus | 11.4 | |
| 9.47 | | |||
| Sbsn | LSX | Lateral septal complex | 2.3 | |
| 1.46 | | |||
| Sbsn | MB | Midbrain | 9.61 | |
| 8.06 | | |||
| Sbsn | MY | Medulla | 19.92 | |
| 20.08 | | |||
| Sbsn | OLF | Olfactory bulb | 34.76 | |
| 26.23 | | |||
| Sbsn | P | Pons | 12.45 | |
| 13.47 | | |||
| Sbsn | PAL | Pallidum | 17.05 | |
| 13.96 | | |||
| Sbsn | RHP | Retrohippocampal region | 34.78 | |
| 23.02 | | |||
| Sbsn | sAMY | Striatum-like amygdalar nuclei | 14.08 | |
| 9.22 | | |||
| Sbsn | STR | Striatum | 21.11 | |
| 13.88 | | |||
| Sbsn | STRd | Striatum dorsal region | 23.28 | |
| 15.23 | | |||
| Sbsn | STRv | Striatum ventral region | 31 | |
| 20.11 | | |||
| Sbsn | TH | Thalamus | 15.3 | |
| 11.68 | |