Annotation Detail for PTAR1
Basic Information Top
| Gene Symbol: | PTAR1 ( FLJ45604 ) |
|---|---|
| Gene Full Name: | protein prenyltransferase alpha subunit repeat containing 1 |
| Band: | 9q21.12 |
| Quick Links | Entrez ID:375743; OMIM: NA; Uniprot ID:PTAR1_HUMAN; ENSEMBL ID: ENSG00000188647; HGNC ID: 30449 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.726389
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 4 / 62319 | 64 |  |
| fetus | 21 / 564012 | 37 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 61 / 1939121 | 31 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 17 / 263845 | 64 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 106 / 3360307 | 31 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 2 / 29757 | 67 | |
| blood | 1 / 123478 | 8 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 27 / 1100989 | 24 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 3 / 16212 | 185 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 4 / 89626 | 44 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 1 / 24145 | 41 | |
| liver | 8 / 207743 | 38 | |
| lung | 2 / 336974 | 5 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 6 / 91610 | 65 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 10 / 280825 | 35 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 6 / 210574 | 28 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 4 / 96619 | 41 | |
| testis | 14 / 330442 | 42 | |
| thymus | 15 / 81131 | 184 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 5 / 52413 | 95 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_24_P75158
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.71 ± 0.14 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 9.62 ± 0.2 | |
| Basal Part of Pons | 9.26 ± 0.26 | |
| Cerebellar Cortex | 9.71 ± 0.21 | |
| Cerebellar Nuclei | 9.54 ± 0.21 | |
| Claustrum | 9.37 ± 0.25 | |
| Epithalamus | 9.91 ± 0.27 | |
| Frontal Lobe | 9.59 ± 0.28 | |
| Globus Pallidus | 9.87 ± 0.28 | |
| Hypothalamus | 9.34 ± 0.2 | |
| Insula | 9.54 ± 0.17 | |
| Limbic Lobe | 9.61 ± 0.34 | |
| Mesencephalon | 9.74 ± 0.26 | |
| Myelencephalon | 9.67 ± 0.31 | |
| Occipital Lobe | 9.95 ± 0.28 | |
| Parietal Lobe | 9.71 ± 0.27 | |
| Pontine Tegmentum | 9.72 ± 0.26 | |
| Striatum | 10.06 ± 0.35 | |
| Subthalamus | 9.63 ± 0.16 | |
| Temporal Lobe | 9.55 ± 0.25 | |
| Thalamus | 9.96 ± 0.3 | |
| White Matter | 10.03 ± 0.17 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ptar1 | CB | Cerebellum | 28.94 | |
| 75.98 | | |||
| Ptar1 | CTX | Cerebral cortex | 23.71 | |
| 16.79 | | |||
| Ptar1 | HIP | Hippocampal region | 16.81 | |
| 17.79 | | |||
| Ptar1 | HPF | Hippocampal formation | 15.1 | |
| 14.2 | | |||
| Ptar1 | HY | Hypothalamus | 4.98 | |
| 3.93 | | |||
| Ptar1 | LSX | Lateral septal complex | 5.22 | |
| 4.2 | | |||
| Ptar1 | MB | Midbrain | 9.48 | |
| 10.13 | | |||
| Ptar1 | MY | Medulla | 18.76 | |
| 20.33 | | |||
| Ptar1 | OLF | Olfactory bulb | 29.95 | |
| 24.3 | | |||
| Ptar1 | P | Pons | 9.22 | |
| 8.65 | | |||
| Ptar1 | PAL | Pallidum | 8.99 | |
| 7.98 | | |||
| Ptar1 | RHP | Retrohippocampal region | 12.54 | |
| 9.5 | | |||
| Ptar1 | sAMY | Striatum-like amygdalar nuclei | 4.24 | |
| 2.68 | | |||
| Ptar1 | STR | Striatum | 5.61 | |
| 4.09 | | |||
| Ptar1 | STRd | Striatum dorsal region | 4.98 | |
| 3.77 | | |||
| Ptar1 | STRv | Striatum ventral region | 8.62 | |
| 5.43 | | |||
| Ptar1 | TH | Thalamus | 37.27 | |
| 33.2 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00006773 | 17 | 25 | 41 | RNPHIDEIGLIPCPEAR | Peptide Atlas |