Annotation Detail for PNPLA7
Basic Information Top
| Gene Symbol: | PNPLA7 ( C9orf111,FLJ31318,FLJ43070,FLJ44279,NTE-R1,NTEL1 ) |
|---|---|
| Gene Full Name: | patatin-like phospholipase domain containing 7 |
| Band: | 9q34.3 |
| Quick Links | Entrez ID:375775; OMIM: 612122; Uniprot ID:PLPL7_HUMAN; ENSEMBL ID: ENSG00000130653; HGNC ID: 24768 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.294147
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 6 / 564012 | 10 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 29 / 1939121 | 14 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 5 / 103127 | 48 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 61 / 3360307 | 18 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 26 / 1100989 | 23 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 1 / 89626 | 11 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 13 / 336974 | 38 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 11 / 91610 | 120 |  |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 5 / 96619 | 51 | |
| testis | 0 / 330442 | 0 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 8 / 52413 | 152 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P43455
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.42 ± 0.43 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.37 ± 0.2 | |
| Basal Part of Pons | 6.46 ± 0.3 | |
| Cerebellar Cortex | 6.08 ± 0.3 | |
| Cerebellar Nuclei | 6.09 ± 0.38 | |
| Claustrum | 6.21 ± 0.46 | |
| Epithalamus | 6.3 ± 0.3 | |
| Frontal Lobe | 6.26 ± 0.41 | |
| Globus Pallidus | 6.23 ± 0.16 | |
| Hypothalamus | 6.17 ± 0.27 | |
| Insula | 6.4 ± 0.4 | |
| Limbic Lobe | 6.38 ± 0.52 | |
| Mesencephalon | 6.22 ± 0.35 | |
| Myelencephalon | 6.35 ± 0.36 | |
| Occipital Lobe | 6.5 ± 0.39 | |
| Parietal Lobe | 6.37 ± 0.3 | |
| Pontine Tegmentum | 6.3 ± 0.45 | |
| Striatum | 6.79 ± 0.33 | |
| Subthalamus | 5.94 ± 0.2 | |
| Temporal Lobe | 6.45 ± 0.33 | |
| Thalamus | 6.44 ± 0.3 | |
| White Matter | 6.9 ± 0.44 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Pnpla7 | CB | Cerebellum | 17.97 | |
| 22.63 | | |||
| Pnpla7 | CTX | Cerebral cortex | 28.81 | |
| 19.32 | | |||
| Pnpla7 | HIP | Hippocampal region | 23.12 | |
| 21.57 | | |||
| Pnpla7 | HPF | Hippocampal formation | 28.19 | |
| 24.17 | | |||
| Pnpla7 | HY | Hypothalamus | 9.67 | |
| 6.91 | | |||
| Pnpla7 | LSX | Lateral septal complex | 1.68 | |
| 1.11 | | |||
| Pnpla7 | MB | Midbrain | 13.66 | |
| 12.68 | | |||
| Pnpla7 | MY | Medulla | 28.64 | |
| 30.86 | | |||
| Pnpla7 | OLF | Olfactory bulb | 26.76 | |
| 19.17 | | |||
| Pnpla7 | P | Pons | 25.81 | |
| 26.05 | | |||
| Pnpla7 | PAL | Pallidum | 22.7 | |
| 21.28 | | |||
| Pnpla7 | RHP | Retrohippocampal region | 36.89 | |
| 27.72 | | |||
| Pnpla7 | sAMY | Striatum-like amygdalar nuclei | 14.68 | |
| 10.55 | | |||
| Pnpla7 | STR | Striatum | 13.62 | |
| 9.79 | | |||
| Pnpla7 | STRd | Striatum dorsal region | 15.02 | |
| 10.97 | | |||
| Pnpla7 | STRv | Striatum ventral region | 9.93 | |
| 6.38 | | |||
| Pnpla7 | TH | Thalamus | 17.19 | |
| 12.99 | |