Annotation Detail for KCNN3
Basic Information Top
| Gene Symbol: | KCNN3 ( KCa2.3,SK3,SKCA3,hSK3 ) |
|---|---|
| Gene Full Name: | potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 |
| Band: | 1q21.3 |
| Quick Links | Entrez ID:3782; OMIM: 602983; Uniprot ID:KCNN3_HUMAN; ENSEMBL ID: ENSG00000143603; HGNC ID: 6292 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.490765
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 3 / 564012 | 5 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 15 / 1939121 | 7 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 3 / 263845 | 11 |  |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 6 / 71755 | 83 |  |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 31 / 3360307 | 9 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 7 / 125191 | 55 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 6 / 1100989 | 5 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 1 / 336974 | 2 | |
| lymph | 4 / 44270 | 90 | |
| lymph node | 12 / 91610 | 130 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 5 / 67052 | 74 | |
| muscle | 9 / 107715 | 83 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 1 / 96619 | 10 | |
| testis | 3 / 330442 | 9 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 205902_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 21.1 | |
| Adipocyte | 5.65 | |
| AdrenalCortex | 6.1 | |
| Adrenalgland | 4.85 | |
| Amygdala | 8.4 | |
| Appendix | 7.75 | |
| AtrioventricularNode | 5 | |
| BDCA4+_DentriticCells | 5.65 | |
| Bonemarrow | 5.7 | |
| BronchialEpithelialCells | 5.6 | |
| CD105+_Endothelial | 5.5 | |
| CD14+_Monocytes | 6.05 | |
| CD19+_BCells(neg._sel.) | 5.85 | |
| CD33+_Myeloid | 6.95 | |
| CD34+ | 6.45 | |
| CD4+_Tcells | 5.85 | |
| CD56+_NKCells | 6.35 | |
| CD71+_EarlyErythroid | 5.4 | |
| CD8+_Tcells | 4.95 | |
| CardiacMyocytes | 7.1 | |
| Caudatenucleus | 5.15 | |
| Cerebellum | 4.65 | |
| CerebellumPeduncles | 6.9 | |
| CiliaryGanglion | 4.55 | |
| CingulateCortex | 8.7 | |
| Colorectaladenocarcinoma | 5.7 | |
| DorsalRootGanglion | 4.7 | |
| FetalThyroid | 5.6 | |
| Fetalbrain | 5.75 | |
| Fetalliver | 4.9 | |
| Fetallung | 4.5 | |
| GlobusPallidus | 4.95 | |
| Heart | 7.15 | |
| Hypothalamus | 6.2 | |
| Kidney | 4.9 | |
| Leukemia_chronicMyelogenousK-562 | 5.2 | |
| Leukemia_promyelocytic-HL-60 | 19.2 | |
| Leukemialymphoblastic(MOLT-4) | 4.65 | |
| Liver | 7.55 | |
| Lung | 6.35 | |
| Lymphnode | 4.95 | |
| Lymphoma_burkitts(Daudi) | 8.15 | |
| Lymphoma_burkitts(Raji) | 69.7 | |
| MedullaOblongata | 5.3 | |
| OccipitalLobe | 5.9 | |
| OlfactoryBulb | 4.5 | |
| Ovary | 3.8 | |
| Pancreas | 4.7 | |
| PancreaticIslet | 6.1 | |
| ParietalLobe | 6.15 | |
| Pituitary | 6.75 | |
| Placenta | 5.5 | |
| Pons | 5.65 | |
| PrefrontalCortex | 10.25 | |
| Prostate | 6.75 | |
| Salivarygland | 4.75 | |
| SkeletalMuscle | 7.5 | |
| Skin | 4.45 | |
| SmoothMuscle | 6.55 | |
| Spinalcord | 6.15 | |
| SubthalamicNucleus | 5.95 | |
| SuperiorCervicalGanglion | 6.55 | |
| TemporalLobe | 5.35 | |
| Testis | 4.9 | |
| TestisGermCell | 4.55 | |
| TestisIntersitial | 4.75 | |
| TestisLeydigCell | 5.7 | |
| TestisSeminiferousTubule | 4.9 | |
| Thalamus | 5.9 | |
| Thymus | 4.3 | |
| Thyroid | 6.9 | |
| Tongue | 5.9 | |
| Tonsil | 5.55 | |
| Trachea | 4.8 | |
| TrigeminalGanglion | 6.6 | |
| Uterus | 30.95 | |
| UterusCorpus | 5.35 | |
| WholeBlood | 5.7 | |
| Wholebrain | 4.95 | |
| colon | 5.75 | |
| pineal_day | 7.12 | |
| pineal_night | 6.92 | |
| retina | 12.375 | |
| small_intestine | 5.55 | |
- Probe name: CUST_15115_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.29 ± 0.57 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.75 ± 0.23 | |
| Basal Part of Pons | 2.99 ± 0.44 | |
| Cerebellar Cortex | 3.51 ± 0.48 | |
| Cerebellar Nuclei | 3.86 ± 1.11 | |
| Claustrum | 3.85 ± 0.89 | |
| Epithalamus | 4.72 ± 0.6 | |
| Frontal Lobe | 3.89 ± 0.74 | |
| Globus Pallidus | 5.91 ± 0.42 | |
| Hypothalamus | 4.33 ± 0.48 | |
| Insula | 3.9 ± 0.54 | |
| Limbic Lobe | 3.94 ± 0.82 | |
| Mesencephalon | 4.66 ± 0.76 | |
| Myelencephalon | 4.29 ± 0.77 | |
| Occipital Lobe | 3.81 ± 0.65 | |
| Parietal Lobe | 4.06 ± 0.78 | |
| Pontine Tegmentum | 4.22 ± 0.48 | |
| Striatum | 5.38 ± 0.49 | |
| Subthalamus | 2.76 ± 0.97 | |
| Temporal Lobe | 4.21 ± 0.59 | |
| Thalamus | 4.69 ± 0.52 | |
| White Matter | 3.83 ± 0.45 | |
Mouse Brain ISH 