AutismKB 2.0

Annotation Detail for ARF5


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Basic Information Top
Gene Symbol:ARF5 ( - )
Gene Full Name: ADP-ribosylation factor 5
Band: 7q32.1
Quick LinksEntrez ID:381; OMIM: 103188; Uniprot ID:ARF5_HUMAN; ENSEMBL ID: ENSG00000004059; HGNC ID: 658
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body14 / 70761197
blastocyst9 / 62319144
fetus43 / 56401276
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult161 / 193912183
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor18 / 94178191
cervical tumor3 / 3436687
chondrosarcoma5 / 8282360
colorectal tumor12 / 114246105
esophageal tumor5 / 17290289
gastrointestinal tumor15 / 119369125
germ cell tumor19 / 26384572
glioma10 / 10688393
head and neck tumor20 / 136302146
kidney tumor14 / 68959203
leukemia8 / 9584283
liver tumor8 / 9635983
lung tumor17 / 103127164
lymphoma12 / 71755167
non-neoplasia4 / 9725041
normal203 / 336030760
ovarian tumor9 / 76682117
pancreatic tumor15 / 104616143
primitive neuroectodermal tumor of the CNS16 / 125680127
prostate cancer13 / 102680126
retinoblastoma2 / 4635643
skin tumor14 / 124949112
soft tissue/muscle tissue tumor17 / 125191135
uterine tumor7 / 9025777
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites4 / 4001599
bladder1 / 2975733
blood16 / 123478129
bone1 / 7165513
bone marrow0 / 488010 
brain48 / 110098943
cervix3 / 4817162
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue32 / 215722148
esophagus5 / 20209247
eye18 / 21105485
heart7 / 8962678
intestine20 / 23447285
kidney18 / 21177784
larynx0 / 241450 
liver14 / 20774367
lung33 / 33697497
lymph5 / 44270112
lymph node6 / 9161065
mammary gland20 / 153271130
mouth3 / 6705244
muscle11 / 107715102
nerve1 / 1576863
ovary15 / 102051146
pancreas16 / 21481274
parathyroid1 / 2053948
pharynx2 / 4132848
pituitary gland2 / 16585120
placenta27 / 28082596
prostate24 / 189345126
salivary gland12 / 20155595
skin18 / 21057485
spleen2 / 5395237
stomach10 / 96619103
testis18 / 33044254
thymus1 / 8113112
thyroid4 / 4747384
tonsil3 / 16999176
trachea0 / 524130 
umbilical cord0 / 136800 
uterus19 / 23287881
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201526_at
Cell line Expression level Expression bar
721_B_lymphoblasts228.95
Adipocyte73.85
AdrenalCortex50.45
Adrenalgland51
Amygdala123.35
Appendix57.4
AtrioventricularNode12.25
BDCA4+_DentriticCells258.8
Bonemarrow97.1
BronchialEpithelialCells180.2
CD105+_Endothelial66.85
CD14+_Monocytes348.55
CD19+_BCells(neg._sel.)130.05
CD33+_Myeloid176.35
CD34+118.9
CD4+_Tcells127.9
CD56+_NKCells178.1
CD71+_EarlyErythroid134.75
CD8+_Tcells101.35
CardiacMyocytes88.05
Caudatenucleus79.55
Cerebellum99.4
CerebellumPeduncles152.6
CiliaryGanglion8.2
CingulateCortex125.35
Colorectaladenocarcinoma132.85
DorsalRootGanglion17.55
FetalThyroid85.85
Fetalbrain110.45
Fetalliver26.35
Fetallung141.1
GlobusPallidus49.25
Heart308.95
Hypothalamus90.95
Kidney56.6
Leukemia_chronicMyelogenousK-56263.4
Leukemia_promyelocytic-HL-6071.35
Leukemialymphoblastic(MOLT-4)209.2
Liver311
Lung225.75
Lymphnode57.1
Lymphoma_burkitts(Daudi)79.75
Lymphoma_burkitts(Raji)118.9
MedullaOblongata103.4
OccipitalLobe89.45
OlfactoryBulb46.4
Ovary39.35
Pancreas50.1
PancreaticIslet81.35
ParietalLobe83.85
Pituitary62.65
Placenta80.75
Pons58.1
PrefrontalCortex215.7
Prostate197.55
Salivarygland17.35
SkeletalMuscle44.8
Skin11
SmoothMuscle88.4
Spinalcord67.85
SubthalamicNucleus40
SuperiorCervicalGanglion24.95
TemporalLobe81.95
Testis124.4
TestisGermCell71
TestisIntersitial31.65
TestisLeydigCell32.65
TestisSeminiferousTubule35.25
Thalamus121.8
Thymus124.55
Thyroid131.75
Tongue64.65
Tonsil41.15
Trachea42.15
TrigeminalGanglion29.3
Uterus141.7
UterusCorpus57.15
WholeBlood383.8
Wholebrain456.05
colon107.9
pineal_day121.5
pineal_night103.18
retina80.125
small_intestine81.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P254601
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.25 ± 0.89
Basal Forebrain7.62 ± 0.43
Basal Part of Pons8.39 ± 0.35
Cerebellar Cortex8.03 ± 0.34
Cerebellar Nuclei7.54 ± 0.49
Claustrum7.32 ± 0.87
Epithalamus7.71 ± 0.45
Frontal Lobe7.96 ± 0.52
Globus Pallidus6.34 ± 0.33
Hypothalamus7.94 ± 0.39
Insula7.89 ± 0.51
Limbic Lobe7.52 ± 0.78
Mesencephalon7.32 ± 0.55
Myelencephalon7.62 ± 0.72
Occipital Lobe7.04 ± 0.7
Parietal Lobe7.63 ± 0.58
Pontine Tegmentum7.53 ± 0.52
Striatum6.97 ± 0.67
Subthalamus7.97 ± 0.2
Temporal Lobe7.92 ± 0.52
Thalamus7.6 ± 0.47
White Matter6.09 ± 0.32
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Arf5CBCerebellum31.28
42.83
Arf5CTXCerebral cortex100
100
Arf5HIPHippocampal region82.54
100
Arf5HPFHippocampal formation96.59
100
Arf5HYHypothalamus88.93
81.07
Arf5LSXLateral septal complex100
95.88
Arf5MBMidbrain82.22
87.19
Arf5MYMedulla79.06
100
Arf5OLFOlfactory bulb100
100
Arf5PPons75.22
97.21
Arf5PALPallidum85.75
92.41
Arf5RHPRetrohippocampal region100
100
Arf5sAMYStriatum-like amygdalar nuclei100
100
Arf5STRStriatum100
85.25
Arf5STRdStriatum dorsal region98.77
82.71
Arf5STRvStriatum ventral region100
81.37
Arf5THThalamus95.76
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
ARF5_HUMAN_109 8 109 116 MLQEDELR PRIDE
ARF5_HUMAN_117 10 117 126 DAVLLVFANK PRIDE
ARF5_HUMAN_171 9 171 179 WLSHELSKR PRIDE
ARF5_HUMAN_19 11 19 29 ILMVGLDAAGK PRIDE
ARF5_HUMAN_36 23 36 58 LKLGEIVTTIPTIGFNVETVEYK PRIDE
ARF5_HUMAN_38 21 38 58 LGEIVTTIPTIGFNVETVEYK PRIDE
ARF5_HUMAN_59 14 59 72 NICFTVWDVGGQDK PRIDE
ARF5_HUMAN_73 6 73 78 IRPLWR PRIDE
ARF5_HUMAN_79 18 79 96 HYFQNTQGLIFVVDSNDR PRIDE
ARF5_HUMAN_79 20 79 98 HYFQNTQGLIFVVDSNDRER PRIDE
ARF5_HUMAN_99 10 99 108 VQESADELQK PRIDE
PAp00003637 20 80 99 HYFQNTQGLIFVVDSNDRER Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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