AutismKB 2.0

Annotation Detail for ZKSCAN4


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Basic Information Top
Gene Symbol:ZKSCAN4 ( FLJ32136,P1P373C6,ZNF307,ZNF427,p373c6.1 )
Gene Full Name: zinc finger with KRAB and SCAN domains 4
Band: 6p22.1
Quick LinksEntrez ID:387032; OMIM: 611643; Uniprot ID:ZKSC4_HUMAN; ENSEMBL ID: ENSG00000187626; HGNC ID: 13854
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst1 / 6231916
fetus9 / 56401215
neonate1 / 3109732
infant4 / 23620169
juvenile1 / 5555617
adult30 / 193912115
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor12 / 26384545
glioma1 / 1068839
head and neck tumor2 / 13630214
kidney tumor5 / 6895972
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia1 / 9725010
normal55 / 336030716
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood8 / 12347864
bone1 / 7165513
bone marrow0 / 488010 
brain22 / 110098919
cervix4 / 4817183
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye1 / 2110544
heart1 / 8962611
intestine0 / 2344720 
kidney8 / 21177737
larynx0 / 241450 
liver0 / 2077430 
lung8 / 33697423
lymph0 / 442700 
lymph node1 / 9161010
mammary gland1 / 1532716
mouth2 / 6705229
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin6 / 21057428
spleen1 / 5395218
stomach1 / 9661910
testis17 / 33044251
thymus0 / 811310 
thyroid0 / 474730 
tonsil1 / 1699958
trachea2 / 5241338
umbilical cord0 / 136800 
uterus4 / 23287817
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213625_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.6
Adipocyte5.4
AdrenalCortex6.05
Adrenalgland4.85
Amygdala5.6
Appendix6.9
AtrioventricularNode4.75
BDCA4+_DentriticCells6.6
Bonemarrow6.3
BronchialEpithelialCells5.25
CD105+_Endothelial6
CD14+_Monocytes5.9
CD19+_BCells(neg._sel.)5.8
CD33+_Myeloid6.85
CD34+6.9
CD4+_Tcells6.15
CD56+_NKCells6.55
CD71+_EarlyErythroid5.05
CD8+_Tcells7.55
CardiacMyocytes7.5
Caudatenucleus4.95
Cerebellum4.5
CerebellumPeduncles6.35
CiliaryGanglion4.05
CingulateCortex5.9
Colorectaladenocarcinoma5.4
DorsalRootGanglion4.55
FetalThyroid5.3
Fetalbrain5.4
Fetalliver5.1
Fetallung4.35
GlobusPallidus4
Heart7
Hypothalamus5.85
Kidney4.75
Leukemia_chronicMyelogenousK-5624.95
Leukemia_promyelocytic-HL-604.85
Leukemialymphoblastic(MOLT-4)4.9
Liver7.5
Lung5.9
Lymphnode4.6
Lymphoma_burkitts(Daudi)7.15
Lymphoma_burkitts(Raji)8.2
MedullaOblongata4.9
OccipitalLobe4.85
OlfactoryBulb4.25
Ovary3.8
Pancreas4.4
PancreaticIslet5.75
ParietalLobe6
Pituitary6.3
Placenta5.45
Pons5.25
PrefrontalCortex6.7
Prostate6.25
Salivarygland4.55
SkeletalMuscle7.55
Skin4.4
SmoothMuscle6.15
Spinalcord5.75
SubthalamicNucleus5.05
SuperiorCervicalGanglion7.7
TemporalLobe5.3
Testis17.7
TestisGermCell5.95
TestisIntersitial14.35
TestisLeydigCell7.45
TestisSeminiferousTubule5.1
Thalamus5.6
Thymus4.2
Thyroid6.75
Tongue5.7
Tonsil5.55
Trachea4.55
TrigeminalGanglion7.25
Uterus4.4
UterusCorpus5.25
WholeBlood6.3
Wholebrain4.5
colon5.5
pineal_day6.68
pineal_night6.6
retina6.5
small_intestine5.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14651_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.06 ± 0.67
Basal Forebrain4.01 ± 1.12
Basal Part of Pons3.54 ± 0.43
Cerebellar Cortex4.2 ± 0.38
Cerebellar Nuclei3.63 ± 0.53
Claustrum3.76 ± 0.94
Epithalamus3.7 ± 0.59
Frontal Lobe3.66 ± 0.62
Globus Pallidus3.89 ± 0.56
Hypothalamus3.41 ± 0.45
Insula3.63 ± 0.45
Limbic Lobe3.71 ± 0.64
Mesencephalon3.79 ± 0.53
Myelencephalon3.77 ± 0.54
Occipital Lobe4.1 ± 0.5
Parietal Lobe3.83 ± 0.65
Pontine Tegmentum3.77 ± 0.71
Striatum3.53 ± 0.56
Subthalamus3.65 ± 0.61
Temporal Lobe3.72 ± 0.49
Thalamus3.72 ± 0.45
White Matter4.14 ± 0.38
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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