Annotation Detail for SNHG5
Basic Information Top
| Gene Symbol: | SNHG5 ( C6orf160,MGC16362,NCRNA00044,U50HG,bA33E24.2 ) |
|---|---|
| Gene Full Name: | small nucleolar RNA host gene 5 (non-protein coding) |
| Band: | 6q14.3 |
| Quick Links | Entrez ID:387066; OMIM: 613263; Uniprot ID:; ENSEMBL ID: ; HGNC ID: 21026 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.292457
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 7 / 70761 | 98 |  |
| blastocyst | 33 / 62319 | 529 |  |
| fetus | 34 / 564012 | 60 | |
| neonate | 5 / 31097 | 160 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 |  |
| adult | 122 / 1939121 | 62 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 10 / 114246 | 87 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 6 / 136302 | 44 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 9 / 96359 | 93 | |
| lung tumor | 8 / 103127 | 77 | |
| lymphoma | 4 / 71755 | 55 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 330 / 3360307 | 98 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 10 / 104616 | 95 | |
| primitive neuroectodermal tumor of the CNS | 11 / 125680 | 87 | |
| prostate cancer | 1 / 102680 | 9 |  |
| retinoblastoma | 9 / 46356 | 194 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 7 / 125191 | 55 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 0 / 29757 | 0 | |
| blood | 6 / 123478 | 48 | |
| bone | 13 / 71655 | 181 | |
| bone marrow | 6 / 48801 | 122 | |
| brain | 25 / 1100989 | 22 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 109 / 215722 | 505 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 19 / 211054 | 90 | |
| heart | 8 / 89626 | 89 | |
| intestine | 13 / 234472 | 55 | |
| kidney | 10 / 211777 | 47 | |
| larynx | 0 / 24145 | 0 | |
| liver | 14 / 207743 | 67 | |
| lung | 22 / 336974 | 65 | |
| lymph | 4 / 44270 | 90 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 54 / 107715 | 501 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 8 / 102051 | 78 | |
| pancreas | 17 / 214812 | 79 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 4 / 41328 | 96 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 17 / 280825 | 60 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 6 / 210574 | 28 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 3 / 96619 | 31 | |
| testis | 5 / 330442 | 15 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 14 / 16999 | 823 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 5 / 13680 | 365 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 2 / 51780 | 38 | |
- Probe name: A_23_P361085
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 10.1 ± 0.28 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 10.57 ± 0.29 | |
| Basal Part of Pons | 9.94 ± 0.28 | |
| Cerebellar Cortex | 9.9 ± 0.1 | |
| Cerebellar Nuclei | 10.53 ± 0.54 | |
| Claustrum | 9.99 ± 0.27 | |
| Epithalamus | 9.88 ± 0.47 | |
| Frontal Lobe | 9.99 ± 0.38 | |
| Globus Pallidus | 11.31 ± 0.17 | |
| Hypothalamus | 10.12 ± 0.48 | |
| Insula | 9.97 ± 0.16 | |
| Limbic Lobe | 9.93 ± 0.35 | |
| Mesencephalon | 10.26 ± 0.5 | |
| Myelencephalon | 10.06 ± 0.43 | |
| Occipital Lobe | 9.9 ± 0.33 | |
| Parietal Lobe | 9.98 ± 0.33 | |
| Pontine Tegmentum | 10.19 ± 0.3 | |
| Striatum | 10.42 ± 0.34 | |
| Subthalamus | 10.39 ± 0.25 | |
| Temporal Lobe | 10 ± 0.3 | |
| Thalamus | 10.01 ± 0.33 | |
| White Matter | 11.53 ± 0.37 | |
Mouse Brain ISH 