Annotation Detail for THEMIS
Basic Information Top
| Gene Symbol: | THEMIS ( C6orf190,C6orf207,FLJ40584,GASP,MGC163388,SPOT,TSEPA,bA325O24.3,bA325O24.4 ) |
|---|---|
| Gene Full Name: | thymocyte selection associated |
| Band: | 6q22.33 |
| Quick Links | Entrez ID:387357; OMIM: 613607; Uniprot ID:THMS1_HUMAN; ENSEMBL ID: ENSG00000172673; HGNC ID: 21569 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.661756
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 3 / 564012 | 5 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 |  |
| adult | 5 / 1939121 | 2 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 16 / 3360307 | 4 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 5 / 1100989 | 4 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 2 / 89626 | 22 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 1 / 24145 | 41 | |
| liver | 1 / 207743 | 4 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 3 / 53952 | 55 |  |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 23 / 81131 | 283 |  |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_1248_PI416573500
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.7 ± 0.98 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.35 ± 0.3 | |
| Basal Part of Pons | 4.55 ± 0.65 | |
| Cerebellar Cortex | 4.24 ± 0.6 | |
| Cerebellar Nuclei | 4.88 ± 0.85 | |
| Claustrum | 8.14 ± 0.73 | |
| Epithalamus | 4.28 ± 0.96 | |
| Frontal Lobe | 5.3 ± 1.32 | |
| Globus Pallidus | 3.67 ± 1.79 | |
| Hypothalamus | 4.8 ± 0.95 | |
| Insula | 5.36 ± 0.46 | |
| Limbic Lobe | 4.99 ± 1.23 | |
| Mesencephalon | 5.02 ± 0.93 | |
| Myelencephalon | 4.94 ± 0.88 | |
| Occipital Lobe | 6.08 ± 0.82 | |
| Parietal Lobe | 5.84 ± 0.92 | |
| Pontine Tegmentum | 5.2 ± 1.21 | |
| Striatum | 2.94 ± 1.7 | |
| Subthalamus | 4.62 ± 0.89 | |
| Temporal Lobe | 5.29 ± 0.81 | |
| Thalamus | 4.43 ± 0.79 | |
| White Matter | 4.1 ± 1.87 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| E430004N04Rik | CB | Cerebellum | 4.79 | |
| 5.09 | | |||
| E430004N04Rik | CTX | Cerebral cortex | 0.49 | |
| 0.85 | | |||
| E430004N04Rik | HIP | Hippocampal region | 0.33 | |
| 0.53 | | |||
| E430004N04Rik | HPF | Hippocampal formation | 0.23 | |
| 0.37 | | |||
| E430004N04Rik | HY | Hypothalamus | 0.04 | |
| 0.17 | | |||
| E430004N04Rik | LSX | Lateral septal complex | 0.61 | |
| 0.95 | | |||
| E430004N04Rik | MB | Midbrain | 0.1 | |
| 0.19 | | |||
| E430004N04Rik | MY | Medulla | 0.48 | |
| 0.5 | | |||
| E430004N04Rik | OLF | Olfactory bulb | 0.99 | |
| 1.59 | | |||
| E430004N04Rik | P | Pons | 0.07 | |
| 0.14 | | |||
| E430004N04Rik | PAL | Pallidum | 0.01 | |
| 0 | | |||
| E430004N04Rik | RHP | Retrohippocampal region | 0.02 | |
| 0.12 | | |||
| E430004N04Rik | sAMY | Striatum-like amygdalar nuclei | 0 | |
| 0 | | |||
| E430004N04Rik | STR | Striatum | 0.2 | |
| 0.28 | | |||
| E430004N04Rik | STRd | Striatum dorsal region | 0.18 | |
| 0.26 | | |||
| E430004N04Rik | STRv | Striatum ventral region | 0.11 | |
| 0.17 | | |||
| E430004N04Rik | TH | Thalamus | 2.16 | |
| 2.71 | |