Annotation Detail for NHLRC3
Basic Information Top
| Gene Symbol: | NHLRC3 ( DKFZp313M1221,DKFZp686E1140 ) |
|---|---|
| Gene Full Name: | NHL repeat containing 3 |
| Band: | 13q13.3 |
| Quick Links | Entrez ID:387921; OMIM: NA; Uniprot ID:NHLC3_HUMAN; ENSEMBL ID: ENSG00000188811; HGNC ID: 33751 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.507783
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 4 / 62319 | 64 |  |
| fetus | 16 / 564012 | 28 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 50 / 1939121 | 25 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 81 / 3360307 | 24 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 4 / 123478 | 32 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 26 / 1100989 | 23 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 0 / 89626 | 0 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 12 / 211777 | 56 | |
| larynx | 0 / 24145 | 0 | |
| liver | 5 / 207743 | 24 | |
| lung | 2 / 336974 | 5 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 8 / 280825 | 28 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 6 / 210574 | 28 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 13 / 330442 | 39 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 5 / 52413 | 95 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P418934
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.59 ± 0.47 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.85 ± 0.11 | |
| Basal Part of Pons | 6.65 ± 0.27 | |
| Cerebellar Cortex | 6.8 ± 0.15 | |
| Cerebellar Nuclei | 6.63 ± 0.18 | |
| Claustrum | 6.29 ± 0.52 | |
| Epithalamus | 6.85 ± 0.2 | |
| Frontal Lobe | 6.62 ± 0.29 | |
| Globus Pallidus | 7.01 ± 0.22 | |
| Hypothalamus | 6.88 ± 0.07 | |
| Insula | 6.63 ± 0.16 | |
| Limbic Lobe | 6.61 ± 0.34 | |
| Mesencephalon | 6.72 ± 0.29 | |
| Myelencephalon | 6.65 ± 0.29 | |
| Occipital Lobe | 6.82 ± 0.35 | |
| Parietal Lobe | 6.66 ± 0.29 | |
| Pontine Tegmentum | 6.74 ± 0.26 | |
| Striatum | 6.67 ± 0.26 | |
| Subthalamus | 6.23 ± 0.34 | |
| Temporal Lobe | 6.65 ± 0.22 | |
| Thalamus | 6.67 ± 0.25 | |
| White Matter | 8 ± 0.15 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 8030451K01Rik | CB | Cerebellum | 1.6 | |
| 2.85 | | |||
| 8030451K01Rik | CTX | Cerebral cortex | 1.39 | |
| 2.04 | | |||
| 8030451K01Rik | HIP | Hippocampal region | 0.54 | |
| 0.89 | | |||
| 8030451K01Rik | HPF | Hippocampal formation | 0.51 | |
| 0.75 | | |||
| 8030451K01Rik | HY | Hypothalamus | 0.3 | |
| 0.35 | | |||
| 8030451K01Rik | LSX | Lateral septal complex | 0.64 | |
| 0.64 | | |||
| 8030451K01Rik | MB | Midbrain | 0.76 | |
| 0.89 | | |||
| 8030451K01Rik | MY | Medulla | 0.87 | |
| 1.11 | | |||
| 8030451K01Rik | OLF | Olfactory bulb | 1.22 | |
| 2.47 | | |||
| 8030451K01Rik | P | Pons | 1.61 | |
| 1.49 | | |||
| 8030451K01Rik | PAL | Pallidum | 0.45 | |
| 0.59 | | |||
| 8030451K01Rik | RHP | Retrohippocampal region | 0.45 | |
| 0.52 | | |||
| 8030451K01Rik | sAMY | Striatum-like amygdalar nuclei | 0.92 | |
| 1.45 | | |||
| 8030451K01Rik | STR | Striatum | 0.52 | |
| 0.69 | | |||
| 8030451K01Rik | STRd | Striatum dorsal region | 0.53 | |
| 0.77 | | |||
| 8030451K01Rik | STRv | Striatum ventral region | 0.29 | |
| 0.29 | | |||
| 8030451K01Rik | TH | Thalamus | 0.86 | |
| 1.08 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00432902 | 31 | 221 | 251 | PPVGSIGECSVISTIQLADQVLPHLLEVDRK | Peptide Atlas |