AutismKB 2.0

Annotation Detail for KRT31


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Basic Information Top
Gene Symbol:KRT31 ( HA1,Ha-1,KRTHA1,MGC138630,hHa1 )
Gene Full Name: keratin 31
Band: 17q21.2
Quick LinksEntrez ID:3881; OMIM: 601077; Uniprot ID:K1H1_HUMAN; ENSEMBL ID: ENSG00000094796; HGNC ID: 6448
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus4 / 5640127
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult14 / 19391217
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor2 / 11424617
esophageal tumor3 / 17290173
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal18 / 33603075
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain14 / 110098912
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus3 / 20209148
eye1 / 2110544
heart0 / 896260 
intestine2 / 2344728
kidney0 / 2117770 
larynx1 / 2414541
liver0 / 2077430 
lung3 / 3369748
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth1 / 6705214
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206677_at
Cell line Expression level Expression bar
721_B_lymphoblasts13
Adipocyte14.5
AdrenalCortex28.1
Adrenalgland13
Amygdala14.3
Appendix17.8
AtrioventricularNode16.05
BDCA4+_DentriticCells12.35
Bonemarrow16.95
BronchialEpithelialCells14.5
CD105+_Endothelial14.3
CD14+_Monocytes16.25
CD19+_BCells(neg._sel.)13.5
CD33+_Myeloid18.15
CD34+18.05
CD4+_Tcells16.1
CD56+_NKCells12.65
CD71+_EarlyErythroid14.1
CD8+_Tcells13.3
CardiacMyocytes18.7
Caudatenucleus13.55
Cerebellum18.8
CerebellumPeduncles30.8
CiliaryGanglion14.75
CingulateCortex17.95
Colorectaladenocarcinoma15.05
DorsalRootGanglion14.35
FetalThyroid14.85
Fetalbrain14.75
Fetalliver13.5
Fetallung10.45
GlobusPallidus12.2
Heart28.8
Hypothalamus16.7
Kidney13.5
Leukemia_chronicMyelogenousK-56213.4
Leukemia_promyelocytic-HL-6013.15
Leukemialymphoblastic(MOLT-4)10.55
Liver22.15
Lung15.3
Lymphnode13.05
Lymphoma_burkitts(Daudi)19.15
Lymphoma_burkitts(Raji)22.25
MedullaOblongata13.55
OccipitalLobe13.5
OlfactoryBulb11.2
Ovary17.7
Pancreas12.85
PancreaticIslet15.9
ParietalLobe16.9
Pituitary17.55
Placenta13.2
Pons18.2
PrefrontalCortex17.65
Prostate15.45
Salivarygland12.35
SkeletalMuscle21.4
Skin16.9
SmoothMuscle16.85
Spinalcord15.75
SubthalamicNucleus16.1
SuperiorCervicalGanglion21.6
TemporalLobe17.75
Testis12.8
TestisGermCell12.1
TestisIntersitial12.6
TestisLeydigCell15.55
TestisSeminiferousTubule17.3
Thalamus17.6
Thymus9.5
Thyroid16
Tongue21.8
Tonsil14.9
Trachea12.55
TrigeminalGanglion19.45
Uterus10.45
UterusCorpus17.15
WholeBlood13.1
Wholebrain9.5
colon15.15
pineal_day17
pineal_night15.36
retina18.425
small_intestine13.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P107465
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.94 ± 0.74
Basal Forebrain4.84 ± 0.47
Basal Part of Pons6.98 ± 0.42
Cerebellar Cortex7.19 ± 0.54
Cerebellar Nuclei5.35 ± 0.53
Claustrum4.9 ± 0.9
Epithalamus5.46 ± 1.02
Frontal Lobe6.68 ± 0.81
Globus Pallidus3.57 ± 0.68
Hypothalamus5.04 ± 0.89
Insula6.34 ± 0.69
Limbic Lobe5.75 ± 1.33
Mesencephalon5.34 ± 0.89
Myelencephalon5.79 ± 1.1
Occipital Lobe4.8 ± 1.2
Parietal Lobe5.66 ± 0.84
Pontine Tegmentum5.7 ± 1.27
Striatum3.6 ± 0.98
Subthalamus4.43 ± 0.34
Temporal Lobe5.55 ± 0.79
Thalamus7.89 ± 1.25
White Matter3.88 ± 0.88
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Krt31CBCerebellum0.64
1.13
Krt31CTXCerebral cortex0.55
0.89
Krt31HIPHippocampal region0.12
0.25
Krt31HPFHippocampal formation0.11
0.21
Krt31HYHypothalamus2.52
4.18
Krt31LSXLateral septal complex0
0
Krt31MBMidbrain0.28
0.52
Krt31MYMedulla1.37
1.98
Krt31OLFOlfactory bulb0.62
0.64
Krt31PPons0.94
1.46
Krt31PALPallidum0.13
0.22
Krt31RHPRetrohippocampal region0.1
0.15
Krt31sAMYStriatum-like amygdalar nuclei0.02
0
Krt31STRStriatum0.14
0.17
Krt31STRdStriatum dorsal region0.18
0.23
Krt31STRvStriatum ventral region0.11
0.1
Krt31THThalamus0.3
0.59
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
K1H1_HUMAN_108 8 108 115 TIEELQQK PRIDE
K1H1_HUMAN_126 9 126 134 LVVQIDNAK PRIDE
K1H1_HUMAN_165 9 165 173 ILDELTLCK PRIDE
K1H1_HUMAN_174 11 174 184 SDLEAQVESLK PRIDE
K1H1_HUMAN_174 18 174 191 SDLEAQVESLKEELLCLK PRIDE
K1H1_HUMAN_208 15 208 222 LNVEVDAAPTVDLNR PRIDE
K1H1_HUMAN_209 15 209 223 LNVEVDAAPTVDLNR PRIDE
K1H1_HUMAN_230 11 230 240 SQYEALVETNR PRIDE
K1H1_HUMAN_256 21 256 276 QVVSSSEQLQSYQAEIIELRR PRIDE
K1H1_HUMAN_334 12 334 345 QNQEYQVLLDVR PRIDE
K1H1_HUMAN_346 11 346 356 ARLECEINTYR PRIDE
K1H1_HUMAN_348 9 348 356 LECEINTYR PRIDE
K1H1_HUMAN_57 9 57 65 ETMQFLNDR PRIDE
PAp00035509 7 136 142 LAADDFR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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