AutismKB 2.0

Annotation Detail for UBE2NL


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Basic Information Top
Gene Symbol:UBE2NL ( - )
Gene Full Name: ubiquitin-conjugating enzyme E2N-like
Band: Xq27.3
Quick LinksEntrez ID:389898; OMIM: NA; Uniprot ID:UE2NL_HUMAN; ENSEMBL ID: ENSG00000102069; HGNC ID: 31710
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst1 / 6231916
fetus2 / 5640123
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult3 / 19391211
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal12 / 33603073
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain2 / 11009891
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye2 / 2110549
heart0 / 896260 
intestine1 / 2344724
kidney0 / 2117770 
larynx0 / 241450 
liver1 / 2077434
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen2 / 5395237
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 217393_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts105.2
Adipocyte103.7
AdrenalCortex112.85
Adrenalgland140.85
Amygdala124.55
Appendix134.75
AtrioventricularNode73.5
BDCA4+_DentriticCells73.2
Bonemarrow147.4
BronchialEpithelialCells100.65
CD105+_Endothelial124.3
CD14+_Monocytes80.85
CD19+_BCells(neg._sel.)110.45
CD33+_Myeloid120.55
CD34+111.7
CD4+_Tcells95.9
CD56+_NKCells109.4
CD71+_EarlyErythroid67.35
CD8+_Tcells78
CardiacMyocytes109.4
Caudatenucleus107.4
Cerebellum122.75
CerebellumPeduncles140.6
CiliaryGanglion54
CingulateCortex142.25
Colorectaladenocarcinoma110.55
DorsalRootGanglion64.85
FetalThyroid87.2
Fetalbrain133.75
Fetalliver164.4
Fetallung82.4
GlobusPallidus71.85
Heart155.8
Hypothalamus151.2
Kidney135.9
Leukemia_chronicMyelogenousK-562103.2
Leukemia_promyelocytic-HL-6090.05
Leukemialymphoblastic(MOLT-4)96.05
Liver141.05
Lung86.95
Lymphnode95.7
Lymphoma_burkitts(Daudi)210.8
Lymphoma_burkitts(Raji)125.65
MedullaOblongata150.25
OccipitalLobe98.5
OlfactoryBulb95.35
Ovary70.75
Pancreas56.6
PancreaticIslet83.4
ParietalLobe95.5
Pituitary131.7
Placenta92.1
Pons179.3
PrefrontalCortex128
Prostate113.75
Salivarygland102.35
SkeletalMuscle103.25
Skin80.4
SmoothMuscle90.2
Spinalcord127.5
SubthalamicNucleus59.6
SuperiorCervicalGanglion252.25
TemporalLobe115.35
Testis221.25
TestisGermCell91.5
TestisIntersitial107.7
TestisLeydigCell155.05
TestisSeminiferousTubule141.35
Thalamus103.75
Thymus86.15
Thyroid143.95
Tongue113.5
Tonsil107.15
Trachea91.4
TrigeminalGanglion201.15
Uterus80.45
UterusCorpus115.25
WholeBlood115.75
Wholebrain99.8
colon156.85
pineal_day125.82
pineal_night108.9
retina153.6
small_intestine118.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P350234
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.49 ± 0.29
Basal Forebrain9.1 ± 0.2
Basal Part of Pons9.3 ± 0.25
Cerebellar Cortex8.97 ± 0.32
Cerebellar Nuclei9.16 ± 0.35
Claustrum9.35 ± 0.36
Epithalamus8.79 ± 0.36
Frontal Lobe9.14 ± 0.38
Globus Pallidus8.91 ± 0.33
Hypothalamus9.3 ± 0.3
Insula9.2 ± 0.28
Limbic Lobe9.37 ± 0.35
Mesencephalon9.2 ± 0.44
Myelencephalon9.16 ± 0.34
Occipital Lobe9.36 ± 0.3
Parietal Lobe9.25 ± 0.34
Pontine Tegmentum9.19 ± 0.29
Striatum9.01 ± 0.35
Subthalamus9.32 ± 0.52
Temporal Lobe9.21 ± 0.29
Thalamus9.15 ± 0.24
White Matter8.68 ± 0.49
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00073326 10 15 24 LLAEPVPGIK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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