Annotation Detail for LAMB1
Basic Information Top
| Gene Symbol: | LAMB1 ( CLM,MGC142015 ) |
|---|---|
| Gene Full Name: | laminin, beta 1 |
| Band: | 7q31.1 |
| Quick Links | Entrez ID:3912; OMIM: 150240; Uniprot ID:LAMB1_HUMAN; ENSEMBL ID: ENSG00000091136; HGNC ID: 6486 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.650585
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 29 / 70761 | 409 |  |
| blastocyst | 23 / 62319 | 369 | |
| fetus | 76 / 564012 | 134 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 |  |
| juvenile | 10 / 55556 | 179 | |
| adult | 276 / 1939121 | 142 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 211651_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 8.8 |  |
| Adipocyte | 837.05 | |
| AdrenalCortex | 14.95 | |
| Adrenalgland | 8.9 | |
| Amygdala | 9.65 | |
| Appendix | 14.65 | |
| AtrioventricularNode | 16.3 | |
| BDCA4+_DentriticCells | 8.1 | |
| Bonemarrow | 10.9 | |
| BronchialEpithelialCells | 144.25 | |
| CD105+_Endothelial | 8.8 | |
| CD14+_Monocytes | 10.15 | |
| CD19+_BCells(neg._sel.) | 8.55 | |
| CD33+_Myeloid | 10.8 | |
| CD34+ | 11.05 | |
| CD4+_Tcells | 7.9 | |
| CD56+_NKCells | 9.45 | |
| CD71+_EarlyErythroid | 9.2 | |
| CD8+_Tcells | 7.45 | |
| CardiacMyocytes | 589.2 | |
| Caudatenucleus | 8.4 | |
| Cerebellum | 8.4 | |
| CerebellumPeduncles | 11.75 | |
| CiliaryGanglion | 12.75 | |
| CingulateCortex | 10.15 | |
| Colorectaladenocarcinoma | 16.05 | |
| DorsalRootGanglion | 18.25 | |
| FetalThyroid | 19.1 | |
| Fetalbrain | 11.6 | |
| Fetalliver | 19.4 | |
| Fetallung | 270 | |
| GlobusPallidus | 8.4 | |
| Heart | 19.35 | |
| Hypothalamus | 9.8 | |
| Kidney | 10.6 | |
| Leukemia_chronicMyelogenousK-562 | 9.25 | |
| Leukemia_promyelocytic-HL-60 | 9.8 | |
| Leukemialymphoblastic(MOLT-4) | 7.1 | |
| Liver | 15.4 | |
| Lung | 10.9 | |
| Lymphnode | 15.45 | |
| Lymphoma_burkitts(Daudi) | 13.1 | |
| Lymphoma_burkitts(Raji) | 15.45 | |
| MedullaOblongata | 8.65 | |
| OccipitalLobe | 9.05 | |
| OlfactoryBulb | 108.65 | |
| Ovary | 8.55 | |
| Pancreas | 23.25 | |
| PancreaticIslet | 43.15 | |
| ParietalLobe | 11.4 | |
| Pituitary | 11.35 | |
| Placenta | 39.4 | |
| Pons | 9.55 | |
| PrefrontalCortex | 11.85 | |
| Prostate | 12.15 | |
| Salivarygland | 8 | |
| SkeletalMuscle | 14.95 | |
| Skin | 10 | |
| SmoothMuscle | 979.4 | |
| Spinalcord | 11.75 | |
| SubthalamicNucleus | 10.6 | |
| SuperiorCervicalGanglion | 15.75 | |
| TemporalLobe | 9.6 | |
| Testis | 8 | |
| TestisGermCell | 11.2 | |
| TestisIntersitial | 11 | |
| TestisLeydigCell | 10.15 | |
| TestisSeminiferousTubule | 8.4 | |
| Thalamus | 11.85 | |
| Thymus | 7.65 | |
| Thyroid | 45 | |
| Tongue | 11.2 | |
| Tonsil | 9.65 | |
| Trachea | 9.5 | |
| TrigeminalGanglion | 11.8 | |
| Uterus | 140.25 | |
| UterusCorpus | 29.75 | |
| WholeBlood | 10.05 | |
| Wholebrain | 7.6 | |
| colon | 32.9 | |
| pineal_day | 174.72 | |
| pineal_night | 283.4 | |
| retina | 12.4 | |
| small_intestine | 11.45 | |
- Probe name: CUST_17062_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.44 ± 0.63 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.21 ± 0.42 | |
| Basal Part of Pons | 5.99 ± 0.47 | |
| Cerebellar Cortex | 7.17 ± 0.23 | |
| Cerebellar Nuclei | 5.66 ± 0.44 | |
| Claustrum | 6.31 ± 0.38 | |
| Epithalamus | 5.71 ± 0.6 | |
| Frontal Lobe | 6.6 ± 0.71 | |
| Globus Pallidus | 4.31 ± 0.92 | |
| Hypothalamus | 5.47 ± 0.53 | |
| Insula | 7.04 ± 0.31 | |
| Limbic Lobe | 6.69 ± 0.85 | |
| Mesencephalon | 6.09 ± 0.82 | |
| Myelencephalon | 6.46 ± 0.66 | |
| Occipital Lobe | 6.13 ± 0.76 | |
| Parietal Lobe | 6.6 ± 0.59 | |
| Pontine Tegmentum | 6.65 ± 0.82 | |
| Striatum | 6.11 ± 0.49 | |
| Subthalamus | 5 ± 0.22 | |
| Temporal Lobe | 6.92 ± 0.47 | |
| Thalamus | 7.18 ± 0.55 | |
| White Matter | 3.97 ± 0.3 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Lamb1-1 | CB | Cerebellum | 19.61 | |
| 22.55 | | |||
| Lamb1-1 | CTX | Cerebral cortex | 7.68 | |
| 5.81 | | |||
| Lamb1-1 | HIP | Hippocampal region | 25.8 | |
| 33 | | |||
| Lamb1-1 | HPF | Hippocampal formation | 21.9 | |
| 23.83 | | |||
| Lamb1-1 | HY | Hypothalamus | 2.23 | |
| 1.7 | | |||
| Lamb1-1 | LSX | Lateral septal complex | 4.37 | |
| 3.48 | | |||
| Lamb1-1 | MB | Midbrain | 3.73 | |
| 3.18 | | |||
| Lamb1-1 | MY | Medulla | 16.8 | |
| 23.8 | | |||
| Lamb1-1 | OLF | Olfactory bulb | 11.54 | |
| 9.11 | | |||
| Lamb1-1 | P | Pons | 3.89 | |
| 3.96 | | |||
| Lamb1-1 | PAL | Pallidum | 2.77 | |
| 2.2 | | |||
| Lamb1-1 | RHP | Retrohippocampal region | 17.38 | |
| 14.22 | | |||
| Lamb1-1 | sAMY | Striatum-like amygdalar nuclei | 3.85 | |
| 2.82 | | |||
| Lamb1-1 | STR | Striatum | 10.85 | |
| 8.56 | | |||
| Lamb1-1 | STRd | Striatum dorsal region | 10.69 | |
| 8.69 | | |||
| Lamb1-1 | STRv | Striatum ventral region | 16.91 | |
| 12.09 | | |||
| Lamb1-1 | TH | Thalamus | 17.39 | |
| 14.97 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| LAMB1_HUMAN_1324 | 11 | 1324 | 1334 | YFQMSLEAEER | PRIDE |
| LAMB1_HUMAN_1531 | 18 | 1531 | 1548 | MEMPSTPQQLQNLTEDIR | PRIDE |
| LAMB1_HUMAN_198 | 11 | 198 | 208 | EPSTEGEVIFR | PRIDE |
| PAp00001199 | 14 | 1000 | 1013 | CLYHTEGEHCQFCR | Peptide Atlas |