AutismKB 2.0

Annotation Detail for STMN1


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Basic Information Top
Gene Symbol:STMN1 ( C1orf215,FLJ32206,LAP18,Lag,MGC138869,MGC138870,OP18,PP17,PP19,PR22,SMN )
Gene Full Name: stathmin 1
Band: 1p36.11
Quick LinksEntrez ID:3925; OMIM: 151442; Uniprot ID:CA215_HUMAN; ENSEMBL ID: ENSG00000117632; HGNC ID: 6510
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body35 / 70761494
blastocyst18 / 62319288
fetus269 / 564012476
neonate6 / 31097192
infant6 / 23620254
juvenile28 / 55556503
adult360 / 1939121185
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor12 / 12794937
bladder carcinoma34 / 174751945
breast (mammary gland) tumor30 / 94178318
cervical tumor11 / 34366320
chondrosarcoma19 / 82823229
colorectal tumor22 / 114246192
esophageal tumor3 / 17290173
gastrointestinal tumor33 / 119369276
germ cell tumor179 / 263845678
glioma17 / 106883159
head and neck tumor12 / 13630288
kidney tumor18 / 68959261
leukemia64 / 95842667
liver tumor39 / 96359404
lung tumor51 / 103127494
lymphoma26 / 71755362
non-neoplasia7 / 9725071
normal941 / 3360307280
ovarian tumor13 / 76682169
pancreatic tumor12 / 104616114
primitive neuroectodermal tumor of the CNS41 / 125680326
prostate cancer21 / 102680204
retinoblastoma104 / 463562243
skin tumor47 / 124949376
soft tissue/muscle tissue tumor130 / 1251911038
uterine tumor21 / 90257232
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland17 / 33197512
ascites8 / 40015199
bladder34 / 297571142
blood54 / 123478437
bone32 / 71655446
bone marrow36 / 48801737
brain374 / 1100989339
cervix11 / 48171228
connective tissue13 / 14925587
ear8 / 16212493
embryonic tissue110 / 215722509
esophagus3 / 20209148
eye132 / 211054625
heart41 / 89626457
intestine37 / 234472157
kidney28 / 211777132
larynx0 / 241450 
liver62 / 207743298
lung83 / 336974246
lymph16 / 44270361
lymph node12 / 91610130
mammary gland32 / 153271208
mouth3 / 6705244
muscle18 / 107715167
nerve6 / 15768380
ovary20 / 102051195
pancreas33 / 214812153
parathyroid5 / 20539243
pharynx12 / 41328290
pituitary gland5 / 16585301
placenta41 / 280825145
prostate29 / 189345153
salivary gland25 / 201551240
skin140 / 210574664
spleen4 / 5395274
stomach14 / 96619144
testis192 / 330442581
thymus91 / 811311121
thyroid1 / 4747321
tonsil4 / 16999235
trachea2 / 5241338
umbilical cord6 / 13680438
uterus153 / 232878656
vascular7 / 51780135
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 200783_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts84.95
Adipocyte9.7
AdrenalCortex10.65
Adrenalgland11.1
Amygdala41.4
Appendix10.35
AtrioventricularNode8.45
BDCA4+_DentriticCells38.85
Bonemarrow19.8
BronchialEpithelialCells24.45
CD105+_Endothelial64.2
CD14+_Monocytes11.45
CD19+_BCells(neg._sel.)14.7
CD33+_Myeloid24.1
CD34+119.35
CD4+_Tcells9.45
CD56+_NKCells16.65
CD71+_EarlyErythroid15.35
CD8+_Tcells7.25
CardiacMyocytes30.95
Caudatenucleus18.9
Cerebellum16.2
CerebellumPeduncles24.2
CiliaryGanglion9.5
CingulateCortex56.1
Colorectaladenocarcinoma34.35
DorsalRootGanglion10.55
FetalThyroid14.1
Fetalbrain235.2
Fetalliver15.55
Fetallung15.35
GlobusPallidus12.25
Heart12.5
Hypothalamus40.3
Kidney10.95
Leukemia_chronicMyelogenousK-56225.2
Leukemia_promyelocytic-HL-6087.65
Leukemialymphoblastic(MOLT-4)196.5
Liver11.75
Lung11.6
Lymphnode10.3
Lymphoma_burkitts(Daudi)125.25
Lymphoma_burkitts(Raji)42.15
MedullaOblongata62.45
OccipitalLobe42.2
OlfactoryBulb28.2
Ovary6.35
Pancreas9.8
PancreaticIslet10.2
ParietalLobe44.35
Pituitary15.9
Placenta11.95
Pons25.15
PrefrontalCortex70.45
Prostate15.85
Salivarygland9.15
SkeletalMuscle15.3
Skin3.5
SmoothMuscle15.25
Spinalcord36.25
SubthalamicNucleus33.1
SuperiorCervicalGanglion15.25
TemporalLobe38.85
Testis55.15
TestisGermCell46.75
TestisIntersitial20.8
TestisLeydigCell16.9
TestisSeminiferousTubule29.9
Thalamus48.9
Thymus150.95
Thyroid9.8
Tongue13.55
Tonsil16.6
Trachea6.85
TrigeminalGanglion12.6
Uterus9.45
UterusCorpus11.1
WholeBlood12.2
Wholebrain57.6
colon21.8
pineal_day193.74
pineal_night207
retina23.5
small_intestine15.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P200866
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala13.85 ± 0.48
Basal Forebrain13.76 ± 0.39
Basal Part of Pons14.24 ± 0.25
Cerebellar Cortex13.83 ± 0.21
Cerebellar Nuclei14.03 ± 0.37
Claustrum14.61 ± 0.41
Epithalamus13.78 ± 0.69
Frontal Lobe14.1 ± 0.44
Globus Pallidus13.3 ± 0.66
Hypothalamus14.65 ± 0.33
Insula14.21 ± 0.3
Limbic Lobe13.48 ± 0.7
Mesencephalon13.9 ± 0.63
Myelencephalon13.83 ± 0.56
Occipital Lobe13.29 ± 0.69
Parietal Lobe13.9 ± 0.47
Pontine Tegmentum13.8 ± 0.46
Striatum12.25 ± 0.8
Subthalamus13.96 ± 0.4
Temporal Lobe14.19 ± 0.34
Thalamus14 ± 0.49
White Matter14.53 ± 0.24
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Stmn1CBCerebellum11.94
14.71
Stmn1CTXCerebral cortex50
50
Stmn1HIPHippocampal region17.34
29.08
Stmn1HPFHippocampal formation36.38
50
Stmn1HYHypothalamus50
50
Stmn1LSXLateral septal complex16.17
20.57
Stmn1MBMidbrain47.38
50
Stmn1MYMedulla28.19
37.49
Stmn1OLFOlfactory bulb50
50
Stmn1PPons41.86
50
Stmn1PALPallidum32.98
43.69
Stmn1RHPRetrohippocampal region50
50
Stmn1sAMYStriatum-like amygdalar nuclei43.85
50
Stmn1STRStriatum15.15
20.11
Stmn1STRdStriatum dorsal region8.95
13
Stmn1STRvStriatum ventral region17.04
20.31
Stmn1THThalamus46.75
50
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00037638 14 28 41 SKESVPEFPLSPPK Peptide Atlas
STMN1_HUMAN_0 0 0 0 ASGQAFELILSPR PRIDE
STMN1_HUMAN_1 13 1 13 ASSDIQVKELEKR PRIDE
STMN1_HUMAN_112 10 112 121 EAQMAAKLER PRIDE
STMN1_HUMAN_113 10 113 122 EAQMAAKLER PRIDE
STMN1_HUMAN_122 12 122 133 LREKDKHIEEVR PRIDE
STMN1_HUMAN_123 11 123 133 REKDKHIEEVR PRIDE
STMN1_HUMAN_124 10 124 133 EKDKHIEEVR PRIDE
STMN1_HUMAN_13 14 13 26 RASGQAFELILSPR PRIDE
STMN1_HUMAN_134 15 134 148 KNKESKDPADETEAD PRIDE
STMN1_HUMAN_135 14 135 148 NKESKDPADETEAD PRIDE
STMN1_HUMAN_135 15 135 149 KNKESKDPADETEAD PRIDE
STMN1_HUMAN_136 13 136 148 KESKDPADETEAD PRIDE
STMN1_HUMAN_137 12 137 148 ESKDPADETEAD PRIDE
STMN1_HUMAN_14 13 14 26 ASGQAFELILSPR PRIDE
STMN1_HUMAN_2 12 2 13 SSDIQVKELEKR PRIDE
STMN1_HUMAN_2 13 2 14 ASSDIQVKELEKR PRIDE
STMN1_HUMAN_27 14 27 40 SKESVPEFPLSPPK PRIDE
STMN1_HUMAN_29 12 29 40 ESVPEFPLSPPK PRIDE
STMN1_HUMAN_43 10 43 52 DLSLEEIQKK PRIDE
STMN1_HUMAN_43 17 43 59 DLSLEEIQKKLEAAEER PRIDE
STMN1_HUMAN_43 9 43 51 DLSLEEIQK PRIDE
STMN1_HUMAN_5 9 5 13 IQVKELEKR PRIDE
STMN1_HUMAN_61 15 61 75 KSHEAEVLKQLAEKR PRIDE
STMN1_HUMAN_62 14 62 75 SHEAEVLKQLAEKR PRIDE
STMN1_HUMAN_85 10 85 94 AIEENNNFSK PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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