Annotation Detail for ABLIM1
Basic Information Top
| Gene Symbol: | ABLIM1 ( ABLIM,DKFZp781D0148,FLJ14564,KIAA0059,LIMAB1,LIMATIN,MGC1224 ) |
|---|---|
| Gene Full Name: | actin binding LIM protein 1 |
| Band: | 10q25.3 |
| Quick Links | Entrez ID:3983; OMIM: 602330; Uniprot ID:ABLM1_HUMAN; ENSEMBL ID: ENSG00000099204; HGNC ID: 78 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.538331
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 8 / 70761 | 113 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 84 / 564012 | 148 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 |  |
| juvenile | 9 / 55556 | 161 | |
| adult | 257 / 1939121 | 132 | |
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 0 / 564012 | 0 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 0 / 1939121 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 9 / 94178 | 95 | |
| cervical tumor | 5 / 34366 | 145 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 28 / 114246 | 245 |  |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 22 / 119369 | 184 | |
| germ cell tumor | 23 / 263845 | 87 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 22 / 136302 | 161 | |
| kidney tumor | 8 / 68959 | 116 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 9 / 71755 | 125 | |
| non-neoplasia | 7 / 97250 | 71 | |
| normal | 497 / 3360307 | 147 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 12 / 104616 | 114 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 8 / 125191 | 63 | |
| uterine tumor | 12 / 90257 | 132 | |
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 2 / 3360307 | 0 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 3 / 13106 | 228 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 6 / 29757 | 201 | |
| blood | 4 / 123478 | 32 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 196 / 1100989 | 178 | |
| cervix | 7 / 48171 | 145 | |
| connective tissue | 8 / 149255 | 53 | |
| ear | 3 / 16212 | 185 | |
| embryonic tissue | 13 / 215722 | 60 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 20 / 211054 | 94 | |
| heart | 19 / 89626 | 211 | |
| intestine | 36 / 234472 | 153 | |
| kidney | 27 / 211777 | 127 | |
| larynx | 5 / 24145 | 207 | |
| liver | 18 / 207743 | 86 | |
| lung | 36 / 336974 | 106 | |
| lymph | 4 / 44270 | 90 | |
| lymph node | 24 / 91610 | 261 | |
| mammary gland | 18 / 153271 | 117 | |
| mouth | 12 / 67052 | 178 | |
| muscle | 29 / 107715 | 269 | |
| nerve | 5 / 15768 | 317 | |
| ovary | 8 / 102051 | 78 | |
| pancreas | 21 / 214812 | 97 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 21 / 41328 | 508 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 9 / 280825 | 32 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 18 / 210574 | 85 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 21 / 96619 | 217 | |
| testis | 53 / 330442 | 160 | |
| thymus | 11 / 81131 | 135 | |
| thyroid | 5 / 47473 | 105 | |
| tonsil | 5 / 16999 | 294 | |
| trachea | 8 / 52413 | 152 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 30 / 232878 | 128 | |
| vascular | 2 / 51780 | 38 | |
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 2 / 1100989 | 1 |  |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 200965_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 276.35 | |
| Adipocyte | 105.7 | |
| AdrenalCortex | 506.05 | |
| Adrenalgland | 527.85 | |
| Amygdala | 593.9 | |
| Appendix | 65.1 | |
| AtrioventricularNode | 110.4 | |
| BDCA4+_DentriticCells | 46.2 | |
| Bonemarrow | 12.6 | |
| BronchialEpithelialCells | 123.05 | |
| CD105+_Endothelial | 13.75 | |
| CD14+_Monocytes | 9.7 | |
| CD19+_BCells(neg._sel.) | 948.85 | |
| CD33+_Myeloid | 13.65 | |
| CD34+ | 284.4 | |
| CD4+_Tcells | 1958.8 |  |
| CD56+_NKCells | 586.05 | |
| CD71+_EarlyErythroid | 9.85 | |
| CD8+_Tcells | 1476.15 | |
| CardiacMyocytes | 23.95 | |
| Caudatenucleus | 326.1 | |
| Cerebellum | 1636.75 | |
| CerebellumPeduncles | 2350.4 | |
| CiliaryGanglion | 83 | |
| CingulateCortex | 305.85 | |
| Colorectaladenocarcinoma | 2458.25 | |
| DorsalRootGanglion | 90.9 | |
| FetalThyroid | 529.5 | |
| Fetalbrain | 797.6 | |
| Fetalliver | 31.05 | |
| Fetallung | 370.5 | |
| GlobusPallidus | 193.15 | |
| Heart | 483.05 | |
| Hypothalamus | 684.6 | |
| Kidney | 190.75 | |
| Leukemia_chronicMyelogenousK-562 | 16.7 | |
| Leukemia_promyelocytic-HL-60 | 54.85 | |
| Leukemialymphoblastic(MOLT-4) | 10.55 | |
| Liver | 51.15 | |
| Lung | 434.5 | |
| Lymphnode | 404.75 | |
| Lymphoma_burkitts(Daudi) | 263.35 | |
| Lymphoma_burkitts(Raji) | 52.65 | |
| MedullaOblongata | 255.9 | |
| OccipitalLobe | 405.1 | |
| OlfactoryBulb | 357.95 | |
| Ovary | 447.9 | |
| Pancreas | 203.3 | |
| PancreaticIslet | 292.1 | |
| ParietalLobe | 332.7 | |
| Pituitary | 293.25 | |
| Placenta | 179.45 | |
| Pons | 218.05 | |
| PrefrontalCortex | 1193.3 | |
| Prostate | 365.5 | |
| Salivarygland | 562 | |
| SkeletalMuscle | 21.2 | |
| Skin | 182.45 | |
| SmoothMuscle | 14 | |
| Spinalcord | 987.8 | |
| SubthalamicNucleus | 219.9 | |
| SuperiorCervicalGanglion | 246.45 | |
| TemporalLobe | 154.95 | |
| Testis | 174.3 | |
| TestisGermCell | 361.75 | |
| TestisIntersitial | 132.4 | |
| TestisLeydigCell | 91.6 | |
| TestisSeminiferousTubule | 166.3 | |
| Thalamus | 411.8 | |
| Thymus | 385.05 | |
| Thyroid | 1502.1 | |
| Tongue | 782.1 | |
| Tonsil | 470.6 | |
| Trachea | 372.3 | |
| TrigeminalGanglion | 87.9 | |
| Uterus | 473.2 | |
| UterusCorpus | 12.65 | |
| WholeBlood | 169.1 | |
| Wholebrain | 402.55 | |
| colon | 248.6 | |
| pineal_day | 869.64 | |
| pineal_night | 1018.64 | |
| retina | 1261.425 | |
| small_intestine | 202.3 | |
- Probe name: CUST_7390_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.21 ± 0.35 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.27 ± 0.17 | |
| Basal Part of Pons | 6.97 ± 0.24 | |
| Cerebellar Cortex | 7.64 ± 0.26 | |
| Cerebellar Nuclei | 7.36 ± 0.21 | |
| Claustrum | 7.36 ± 0.37 | |
| Epithalamus | 7.43 ± 0.35 | |
| Frontal Lobe | 7.1 ± 0.4 | |
| Globus Pallidus | 7.53 ± 0.58 | |
| Hypothalamus | 7.19 ± 0.53 | |
| Insula | 7.09 ± 0.34 | |
| Limbic Lobe | 7.1 ± 0.44 | |
| Mesencephalon | 7.21 ± 0.3 | |
| Myelencephalon | 7.27 ± 0.39 | |
| Occipital Lobe | 7.32 ± 0.4 | |
| Parietal Lobe | 7.08 ± 0.41 | |
| Pontine Tegmentum | 7.24 ± 0.41 | |
| Striatum | 7.18 ± 0.54 | |
| Subthalamus | 7.17 ± 0.34 | |
| Temporal Lobe | 7.05 ± 0.29 | |
| Thalamus | 7.25 ± 0.35 | |
| White Matter | 6.65 ± 0.42 | |
Mouse Brain ISH 