AutismKB 2.0

Annotation Detail for MEX3D


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Basic Information Top
Gene Symbol:MEX3D ( KIAA2031,MEX-3D,MEX3,OK/SW-cl.4,RKHD1,RNF193,TINO )
Gene Full Name: mex-3 homolog D (C. elegans)
Band: 19p13.3
Quick LinksEntrez ID:399664; OMIM: 611009; Uniprot ID:MEX3D_HUMAN; ENSEMBL ID: ENSG00000181588; HGNC ID: 16734
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst0 / 623190 
fetus14 / 56401224
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult22 / 193912111
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor5 / 26384518
glioma6 / 10688356
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal48 / 336030714
ovarian tumor6 / 7668278
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites2 / 4001549
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain7 / 11009896
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye0 / 2110540 
heart1 / 8962611
intestine4 / 23447217
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung4 / 33697411
lymph0 / 442700 
lymph node1 / 9161010
mammary gland1 / 1532716
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary6 / 10205158
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta6 / 28082521
prostate4 / 18934521
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach1 / 9661910
testis3 / 3304429
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 91816_f_at
Cell line Expression level Expression bar
721_B_lymphoblasts3.7
Adipocyte2.95
AdrenalCortex3
Adrenalgland2.45
Amygdala3.1
Appendix2.9
AtrioventricularNode2.2
BDCA4+_DentriticCells3.3
Bonemarrow2.9
BronchialEpithelialCells2.95
CD105+_Endothelial3
CD14+_Monocytes3.1
CD19+_BCells(neg._sel.)3.15
CD33+_Myeloid3.8
CD34+3.75
CD4+_Tcells3.25
CD56+_NKCells3.55
CD71+_EarlyErythroid2.7
CD8+_Tcells2.9
CardiacMyocytes3.7
Caudatenucleus2.6
Cerebellum2.35
CerebellumPeduncles3.3
CiliaryGanglion2.05
CingulateCortex3
Colorectaladenocarcinoma3
DorsalRootGanglion2.2
FetalThyroid2.85
Fetalbrain2.95
Fetalliver2.55
Fetallung2.5
GlobusPallidus2.15
Heart3.7
Hypothalamus3.2
Kidney2.35
Leukemia_chronicMyelogenousK-5622.65
Leukemia_promyelocytic-HL-602.6
Leukemialymphoblastic(MOLT-4)2.35
Liver3.85
Lung4.15
Lymphnode2.55
Lymphoma_burkitts(Daudi)3.75
Lymphoma_burkitts(Raji)4.1
MedullaOblongata2.7
OccipitalLobe2.65
OlfactoryBulb2.35
Ovary1.9
Pancreas2.35
PancreaticIslet3.15
ParietalLobe3.1
Pituitary3.45
Placenta18.2
Pons2.75
PrefrontalCortex3.75
Prostate4.2
Salivarygland2.3
SkeletalMuscle3.3
Skin2.25
SmoothMuscle3.4
Spinalcord3.15
SubthalamicNucleus2.6
SuperiorCervicalGanglion3.25
TemporalLobe2.65
Testis2.55
TestisGermCell2.5
TestisIntersitial2.45
TestisLeydigCell2.9
TestisSeminiferousTubule2.5
Thalamus3
Thymus2.35
Thyroid3.75
Tongue2.85
Tonsil2.85
Trachea2.45
TrigeminalGanglion2.85
Uterus2.45
UterusCorpus2.6
WholeBlood3.25
Wholebrain2.85
colon3
pineal_day3.66
pineal_night3.64
retina3.625
small_intestine2.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P923765
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala11.89 ± 0.46
Basal Forebrain11.75 ± 0.19
Basal Part of Pons12.24 ± 0.32
Cerebellar Cortex11.55 ± 0.49
Cerebellar Nuclei11.84 ± 0.47
Claustrum11.75 ± 0.48
Epithalamus11.41 ± 0.24
Frontal Lobe11.94 ± 0.54
Globus Pallidus12.19 ± 0.22
Hypothalamus11.55 ± 0.58
Insula11.84 ± 0.54
Limbic Lobe11.95 ± 0.43
Mesencephalon11.68 ± 0.38
Myelencephalon11.89 ± 0.49
Occipital Lobe11.64 ± 0.48
Parietal Lobe11.76 ± 0.43
Pontine Tegmentum11.67 ± 0.55
Striatum12.01 ± 0.66
Subthalamus11.61 ± 0.5
Temporal Lobe11.85 ± 0.48
Thalamus11.79 ± 0.44
White Matter12.25 ± 0.33
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rkhd1CBCerebellum21.78
26.37
Rkhd1CTXCerebral cortex13.19
7.89
Rkhd1HIPHippocampal region13.14
14.08
Rkhd1HPFHippocampal formation15.68
13.71
Rkhd1HYHypothalamus7.06
4.1
Rkhd1LSXLateral septal complex7
2.77
Rkhd1MBMidbrain8.67
7.24
Rkhd1MYMedulla19.29
13.73
Rkhd1OLFOlfactory bulb25.37
17.97
Rkhd1PPons7.45
7.58
Rkhd1PALPallidum7.62
5.02
Rkhd1RHPRetrohippocampal region21.37
14.66
Rkhd1sAMYStriatum-like amygdalar nuclei7
4.39
Rkhd1STRStriatum6.99
4.25
Rkhd1STRdStriatum dorsal region5.67
3.55
Rkhd1STRvStriatum ventral region11.1
6.55
Rkhd1THThalamus9.69
7.71
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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