AutismKB 2.0

Annotation Detail for FAM102A


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Basic Information Top
Gene Symbol:FAM102A ( C9orf132,EEIG1,MGC50853,bA203J24.7 )
Gene Full Name: family with sequence similarity 102, member A
Band: 9q34.11
Quick LinksEntrez ID:399665; OMIM: 610891; Uniprot ID:F102A_HUMAN; ENSEMBL ID: ENSG00000167106; HGNC ID: 31419
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst5 / 6231980
fetus20 / 56401235
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult104 / 193912153
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor7 / 9417874
cervical tumor1 / 3436629
chondrosarcoma6 / 8282372
colorectal tumor6 / 11424652
esophageal tumor1 / 1729057
gastrointestinal tumor11 / 11936992
germ cell tumor3 / 26384511
glioma17 / 106883159
head and neck tumor6 / 13630244
kidney tumor4 / 6895958
leukemia3 / 9584231
liver tumor0 / 963590 
lung tumor6 / 10312758
lymphoma12 / 71755167
non-neoplasia2 / 9725020
normal183 / 336030754
ovarian tumor7 / 7668291
pancreatic tumor30 / 104616286
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor10 / 12494980
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites4 / 4001599
bladder1 / 2975733
blood1 / 1234788
bone7 / 7165597
bone marrow1 / 4880120
brain61 / 110098955
cervix1 / 4817120
connective tissue2 / 14925513
ear1 / 1621261
embryonic tissue8 / 21572237
esophagus1 / 2020949
eye9 / 21105442
heart0 / 896260 
intestine11 / 23447246
kidney10 / 21177747
larynx1 / 2414541
liver2 / 2077439
lung27 / 33697480
lymph7 / 44270158
lymph node40 / 91610436
mammary gland9 / 15327158
mouth3 / 6705244
muscle0 / 1077150 
nerve0 / 157680 
ovary8 / 10205178
pancreas46 / 214812214
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland2 / 16585120
placenta4 / 28082514
prostate15 / 18934579
salivary gland0 / 201550 
skin16 / 21057475
spleen1 / 5395218
stomach4 / 9661941
testis12 / 33044236
thymus4 / 8113149
thyroid3 / 4747363
tonsil2 / 16999117
trachea0 / 524130 
umbilical cord0 / 136800 
uterus9 / 23287838
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212400_at
Cell line Expression level Expression bar
721_B_lymphoblasts242.3
Adipocyte93.8
AdrenalCortex135
Adrenalgland137.8
Amygdala237.4
Appendix154
AtrioventricularNode57.85
BDCA4+_DentriticCells70.25
Bonemarrow97.35
BronchialEpithelialCells47.35
CD105+_Endothelial95.65
CD14+_Monocytes56.5
CD19+_BCells(neg._sel.)387.9
CD33+_Myeloid36.95
CD34+55.9
CD4+_Tcells1383.55
CD56+_NKCells76
CD71+_EarlyErythroid40
CD8+_Tcells1209.5
CardiacMyocytes103.2
Caudatenucleus334.7
Cerebellum137.5
CerebellumPeduncles194.25
CiliaryGanglion72.4
CingulateCortex201.25
Colorectaladenocarcinoma167
DorsalRootGanglion113.45
FetalThyroid109.15
Fetalbrain110.25
Fetalliver66.7
Fetallung97.9
GlobusPallidus132.4
Heart164.85
Hypothalamus274.6
Kidney143.6
Leukemia_chronicMyelogenousK-56290.15
Leukemia_promyelocytic-HL-60162.35
Leukemialymphoblastic(MOLT-4)77.15
Liver147.85
Lung184.35
Lymphnode272.95
Lymphoma_burkitts(Daudi)197.1
Lymphoma_burkitts(Raji)553.85
MedullaOblongata185.35
OccipitalLobe254.95
OlfactoryBulb253.55
Ovary46.1
Pancreas93.85
PancreaticIslet278.35
ParietalLobe257.75
Pituitary330.55
Placenta128.15
Pons159.95
PrefrontalCortex393.1
Prostate208.6
Salivarygland111.45
SkeletalMuscle178.6
Skin110.05
SmoothMuscle120.2
Spinalcord339.55
SubthalamicNucleus153.85
SuperiorCervicalGanglion133.4
TemporalLobe189.15
Testis216
TestisGermCell260.1
TestisIntersitial130.55
TestisLeydigCell137.65
TestisSeminiferousTubule149
Thalamus420.9
Thymus311.45
Thyroid275.5
Tongue162.55
Tonsil248.85
Trachea138.15
TrigeminalGanglion109.15
Uterus141.95
UterusCorpus199.8
WholeBlood190.8
Wholebrain324.1
colon152.35
pineal_day171.24
pineal_night179.96
retina272.6
small_intestine160.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P89523
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.51 ± 1.04
Basal Forebrain2.47 ± 0.52
Basal Part of Pons2.55 ± 0.68
Cerebellar Cortex2.29 ± 0.56
Cerebellar Nuclei2.76 ± 0.85
Claustrum3.16 ± 0.74
Epithalamus2.5 ± 0.85
Frontal Lobe2.53 ± 0.8
Globus Pallidus3.26 ± 0.6
Hypothalamus2.5 ± 0.79
Insula2.47 ± 0.83
Limbic Lobe2.94 ± 0.79
Mesencephalon2.98 ± 0.89
Myelencephalon2.86 ± 0.75
Occipital Lobe3.38 ± 0.64
Parietal Lobe2.77 ± 0.76
Pontine Tegmentum2.91 ± 0.79
Striatum4.16 ± 0.68
Subthalamus2.64 ± 0.84
Temporal Lobe2.65 ± 0.72
Thalamus2.73 ± 0.69
White Matter3.88 ± 0.44
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
C230093N12RikCBCerebellum9.9
9.06
C230093N12RikCTXCerebral cortex19.71
8.45
C230093N12RikHIPHippocampal region15.19
10.94
C230093N12RikHPFHippocampal formation22.8
13.32
C230093N12RikHYHypothalamus13.09
4.55
C230093N12RikLSXLateral septal complex31.96
17.65
C230093N12RikMBMidbrain11.15
5.26
C230093N12RikMYMedulla14.69
6.94
C230093N12RikOLFOlfactory bulb30.61
15.87
C230093N12RikPPons15.94
6.82
C230093N12RikPALPallidum16.15
6.59
C230093N12RikRHPRetrohippocampal region37.48
17.62
C230093N12RiksAMYStriatum-like amygdalar nuclei15.56
5.47
C230093N12RikSTRStriatum16.15
6.94
C230093N12RikSTRdStriatum dorsal region15.15
6.36
C230093N12RikSTRvStriatum ventral region15.69
6.91
C230093N12RikTHThalamus17.28
7.04
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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