AutismKB 2.0

Annotation Detail for SNX19


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:SNX19 ( CHET8,DKFZp667I205,KIAA0254 )
Gene Full Name: sorting nexin 19
Band: 11q24.3-q25
Quick LinksEntrez ID:399979; OMIM: NA; Uniprot ID:SNX19_HUMAN; ENSEMBL ID: ENSG00000120451; HGNC ID: 21532
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst2 / 6231932
fetus41 / 56401272
neonate1 / 3109732
infant0 / 236200 
juvenile0 / 555560 
adult108 / 193912155
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor5 / 9417853
cervical tumor0 / 343660 
chondrosarcoma5 / 8282360
colorectal tumor9 / 11424678
esophageal tumor0 / 172900 
gastrointestinal tumor7 / 11936958
germ cell tumor8 / 26384530
glioma3 / 10688328
head and neck tumor5 / 13630236
kidney tumor2 / 6895929
leukemia3 / 9584231
liver tumor3 / 9635931
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal201 / 336030759
ovarian tumor3 / 7668239
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer3 / 10268029
retinoblastoma2 / 4635643
skin tumor2 / 12494916
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites0 / 400150 
bladder2 / 2975767
blood1 / 1234788
bone7 / 7165597
bone marrow2 / 4880140
brain64 / 110098958
cervix0 / 481710 
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus0 / 202090 
eye26 / 211054123
heart6 / 8962666
intestine18 / 23447276
kidney12 / 21177756
larynx0 / 241450 
liver7 / 20774333
lung8 / 33697423
lymph0 / 442700 
lymph node13 / 91610141
mammary gland7 / 15327145
mouth4 / 6705259
muscle4 / 10771537
nerve0 / 157680 
ovary5 / 10205148
pancreas9 / 21481241
parathyroid2 / 2053997
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta6 / 28082521
prostate5 / 18934526
salivary gland0 / 201550 
skin4 / 21057418
spleen2 / 5395237
stomach6 / 9661962
testis33 / 33044299
thymus4 / 8113149
thyroid3 / 4747363
tonsil0 / 169990 
trachea6 / 52413114
umbilical cord0 / 136800 
uterus9 / 23287838
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202359_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts14.1
Adipocyte11.8
AdrenalCortex14
Adrenalgland14.5
Amygdala14.45
Appendix13.65
AtrioventricularNode11.5
BDCA4+_DentriticCells18.6
Bonemarrow13.35
BronchialEpithelialCells11.55
CD105+_Endothelial11.9
CD14+_Monocytes12.85
CD19+_BCells(neg._sel.)12.35
CD33+_Myeloid14.75
CD34+16.15
CD4+_Tcells12.6
CD56+_NKCells14.3
CD71+_EarlyErythroid11.65
CD8+_Tcells14.15
CardiacMyocytes18.95
Caudatenucleus11.1
Cerebellum10.2
CerebellumPeduncles14.4
CiliaryGanglion10.2
CingulateCortex12.55
Colorectaladenocarcinoma12.3
DorsalRootGanglion10.7
FetalThyroid12.5
Fetalbrain11.85
Fetalliver10.85
Fetallung9.4
GlobusPallidus9.6
Heart20.25
Hypothalamus23.5
Kidney11.05
Leukemia_chronicMyelogenousK-56210.05
Leukemia_promyelocytic-HL-6010.45
Leukemialymphoblastic(MOLT-4)9.55
Liver18.6
Lung13.35
Lymphnode9.9
Lymphoma_burkitts(Daudi)16.3
Lymphoma_burkitts(Raji)18.1
MedullaOblongata10.95
OccipitalLobe10.75
OlfactoryBulb9.45
Ovary8.7
Pancreas10.35
PancreaticIslet12.95
ParietalLobe13.9
Pituitary14.35
Placenta13.35
Pons14.15
PrefrontalCortex15.3
Prostate18.15
Salivarygland10.15
SkeletalMuscle17.25
Skin10.8
SmoothMuscle14.85
Spinalcord15.9
SubthalamicNucleus12.15
SuperiorCervicalGanglion17.85
TemporalLobe11.55
Testis13.05
TestisGermCell18.5
TestisIntersitial11.35
TestisLeydigCell12.9
TestisSeminiferousTubule10.8
Thalamus13.05
Thymus9.3
Thyroid23.75
Tongue12.8
Tonsil12
Trachea10.15
TrigeminalGanglion15.35
Uterus10.4
UterusCorpus11.65
WholeBlood13.05
Wholebrain9.9
colon15.95
pineal_day18.76
pineal_night28.36
retina18.8
small_intestine21.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P81691
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.72 ± 0.38
Basal Forebrain5.91 ± 0.31
Basal Part of Pons5.85 ± 0.27
Cerebellar Cortex5.75 ± 0.25
Cerebellar Nuclei5.79 ± 0.31
Claustrum5.41 ± 0.45
Epithalamus5.98 ± 0.35
Frontal Lobe5.75 ± 0.34
Globus Pallidus6.38 ± 0.21
Hypothalamus5.91 ± 0.34
Insula5.71 ± 0.46
Limbic Lobe5.8 ± 0.29
Mesencephalon5.8 ± 0.44
Myelencephalon5.83 ± 0.37
Occipital Lobe5.89 ± 0.38
Parietal Lobe5.83 ± 0.29
Pontine Tegmentum5.83 ± 0.32
Striatum5.98 ± 0.29
Subthalamus5.6 ± 0.49
Temporal Lobe5.82 ± 0.26
Thalamus5.9 ± 0.35
White Matter6.84 ± 0.08
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Snx19CBCerebellum42.16
66.94
Snx19CTXCerebral cortex34.44
28.04
Snx19HIPHippocampal region32.96
51.76
Snx19HPFHippocampal formation31.43
39.52
Snx19HYHypothalamus16.59
13.44
Snx19LSXLateral septal complex17.86
13.68
Snx19MBMidbrain25.82
25.86
Snx19MYMedulla42.7
54.09
Snx19OLFOlfactory bulb36.89
33.99
Snx19PPons32.55
40.32
Snx19PALPallidum18.37
17.95
Snx19RHPRetrohippocampal region28.87
24.02
Snx19sAMYStriatum-like amygdalar nuclei10.57
8.59
Snx19STRStriatum18.55
14.3
Snx19STRdStriatum dorsal region16.25
12.38
Snx19STRvStriatum ventral region33.47
25.05
Snx19THThalamus25.95
23.63
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00501801 19 195 213 ATAPHPAVHSPSAEVTYTR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved