Annotation Detail for PRICKLE3
Basic Information Top
| Gene Symbol: | PRICKLE3 ( LMO6 ) |
|---|---|
| Gene Full Name: | prickle homolog 3 (Drosophila) |
| Band: | Xp11.23 |
| Quick Links | Entrez ID:4007; OMIM: 300111; Uniprot ID:PRIC3_HUMAN; ENSEMBL ID: ENSG00000012211; HGNC ID: 6645 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.632802
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 5 / 564012 | 8 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 27 / 1939121 | 13 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 3 / 17290 | 173 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 6 / 103127 | 58 | |
| lymphoma | 4 / 71755 | 55 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 33 / 3360307 | 9 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 1 / 1100989 | 0 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 3 / 20209 | 148 | |
| eye | 1 / 211054 | 4 | |
| heart | 0 / 89626 | 0 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 5 / 207743 | 24 | |
| lung | 9 / 336974 | 26 | |
| lymph | 4 / 44270 | 90 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 8 / 280825 | 28 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 4 / 210574 | 18 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 1 / 330442 | 3 | |
| thymus | 6 / 81131 | 73 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 1 / 51780 | 19 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 217349_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 10.65 | |
| Adipocyte | 4.15 | |
| AdrenalCortex | 4.5 | |
| Adrenalgland | 3.55 | |
| Amygdala | 4.25 | |
| Appendix | 4.35 | |
| AtrioventricularNode | 3.55 | |
| BDCA4+_DentriticCells | 4.75 | |
| Bonemarrow | 4.3 | |
| BronchialEpithelialCells | 4.4 | |
| CD105+_Endothelial | 4.1 | |
| CD14+_Monocytes | 4.5 | |
| CD19+_BCells(neg._sel.) | 4.4 | |
| CD33+_Myeloid | 5.85 | |
| CD34+ | 5.4 | |
| CD4+_Tcells | 4.65 | |
| CD56+_NKCells | 4.8 | |
| CD71+_EarlyErythroid | 3.9 | |
| CD8+_Tcells | 4 | |
| CardiacMyocytes | 6.55 | |
| Caudatenucleus | 3.75 | |
| Cerebellum | 3.35 | |
| CerebellumPeduncles | 4.7 | |
| CiliaryGanglion | 3.35 | |
| CingulateCortex | 5.6 | |
| Colorectaladenocarcinoma | 6.45 | |
| DorsalRootGanglion | 3.35 | |
| FetalThyroid | 4.15 | |
| Fetalbrain | 4.2 | |
| Fetalliver | 3.5 | |
| Fetallung | 3.45 | |
| GlobusPallidus | 3.1 | |
| Heart | 5.4 | |
| Hypothalamus | 4.55 | |
| Kidney | 3.5 | |
| Leukemia_chronicMyelogenousK-562 | 4.05 | |
| Leukemia_promyelocytic-HL-60 | 4.95 | |
| Leukemialymphoblastic(MOLT-4) | 3.45 | |
| Liver | 5.6 | |
| Lung | 4.8 | |
| Lymphnode | 3.65 | |
| Lymphoma_burkitts(Daudi) | 5.35 | |
| Lymphoma_burkitts(Raji) | 8.25 | |
| MedullaOblongata | 3.9 | |
| OccipitalLobe | 3.8 | |
| OlfactoryBulb | 3.25 | |
| Ovary | 2.8 | |
| Pancreas | 3.4 | |
| PancreaticIslet | 4.45 | |
| ParietalLobe | 4.55 | |
| Pituitary | 4.9 | |
| Placenta | 4.35 | |
| Pons | 3.95 | |
| PrefrontalCortex | 4.95 | |
| Prostate | 4.95 | |
| Salivarygland | 3.25 | |
| SkeletalMuscle | 5.95 | |
| Skin | 3.45 | |
| SmoothMuscle | 4.7 | |
| Spinalcord | 4.45 | |
| SubthalamicNucleus | 3.85 | |
| SuperiorCervicalGanglion | 5.05 | |
| TemporalLobe | 3.8 | |
| Testis | 3.6 | |
| TestisGermCell | 3.45 | |
| TestisIntersitial | 3.5 | |
| TestisLeydigCell | 5.15 | |
| TestisSeminiferousTubule | 4.1 | |
| Thalamus | 4.25 | |
| Thymus | 3.3 | |
| Thyroid | 5.65 | |
| Tongue | 4.25 | |
| Tonsil | 4.1 | |
| Trachea | 3.55 | |
| TrigeminalGanglion | 4.35 | |
| Uterus | 3.4 | |
| UterusCorpus | 3.85 | |
| WholeBlood | 4.9 | |
| Wholebrain | 3.65 | |
| colon | 4.15 | |
| pineal_day | 5.02 | |
| pineal_night | 4.96 | |
| retina | 5.075 | |
| small_intestine | 4 | |
- Probe name: CUST_8880_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.38 ± 1.08 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.82 ± 0.32 | |
| Basal Part of Pons | 1.42 ± 0.47 | |
| Cerebellar Cortex | 1.67 ± 0.6 | |
| Cerebellar Nuclei | 2.18 ± 0.91 | |
| Claustrum | 2.66 ± 1.05 | |
| Epithalamus | 1.43 ± 0.72 | |
| Frontal Lobe | 1.61 ± 0.71 | |
| Globus Pallidus | 2.17 ± 0.35 | |
| Hypothalamus | 1.82 ± 0.69 | |
| Insula | 1.55 ± 0.49 | |
| Limbic Lobe | 1.82 ± 0.74 | |
| Mesencephalon | 1.92 ± 0.77 | |
| Myelencephalon | 1.88 ± 0.69 | |
| Occipital Lobe | 1.89 ± 0.77 | |
| Parietal Lobe | 1.92 ± 0.82 | |
| Pontine Tegmentum | 1.93 ± 0.75 | |
| Striatum | 2.05 ± 0.92 | |
| Subthalamus | 1.93 ± 0.7 | |
| Temporal Lobe | 1.75 ± 0.73 | |
| Thalamus | 1.8 ± 0.71 | |
| White Matter | 2.22 ± 0.52 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Lmo6 | CB | Cerebellum | 16.46 | |
| 23.89 | | |||
| Lmo6 | CTX | Cerebral cortex | 22.51 | |
| 16.48 | | |||
| Lmo6 | HIP | Hippocampal region | 9.86 | |
| 9 | | |||
| Lmo6 | HPF | Hippocampal formation | 16.84 | |
| 13.9 | | |||
| Lmo6 | HY | Hypothalamus | 3.84 | |
| 3.08 | | |||
| Lmo6 | LSX | Lateral septal complex | 1.55 | |
| 1.54 | | |||
| Lmo6 | MB | Midbrain | 10.18 | |
| 10.07 | | |||
| Lmo6 | MY | Medulla | 13.3 | |
| 15.01 | | |||
| Lmo6 | OLF | Olfactory bulb | 15.94 | |
| 12.42 | | |||
| Lmo6 | P | Pons | 10.75 | |
| 12.81 | | |||
| Lmo6 | PAL | Pallidum | 4.41 | |
| 3.6 | | |||
| Lmo6 | RHP | Retrohippocampal region | 28.98 | |
| 20.96 | | |||
| Lmo6 | sAMY | Striatum-like amygdalar nuclei | 8.73 | |
| 5.6 | | |||
| Lmo6 | STR | Striatum | 9.42 | |
| 6.78 | | |||
| Lmo6 | STRd | Striatum dorsal region | 12.63 | |
| 9.37 | | |||
| Lmo6 | STRv | Striatum ventral region | 6.55 | |
| 4.15 | | |||
| Lmo6 | TH | Thalamus | 3.52 | |
| 3.1 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PRIC3_HUMAN_436 | 9 | 436 | 444 | HSMPELGLR | PRIDE |