AutismKB 2.0

Annotation Detail for LMO7


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Basic Information Top
Gene Symbol:LMO7 ( FBX20,FBXO20,KIAA0858,LOMP )
Gene Full Name: LIM domain 7
Band: 13q22.2
Quick LinksEntrez ID:4008; OMIM: 604362; Uniprot ID:LMO7_HUMAN; ENSEMBL ID: ENSG00000136153; HGNC ID: 6646
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus51 / 56401290
neonate1 / 3109732
infant1 / 2362042
juvenile0 / 555560 
adult104 / 193912153
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma3 / 17475171
breast (mammary gland) tumor7 / 9417874
cervical tumor1 / 3436629
chondrosarcoma7 / 8282384
colorectal tumor12 / 114246105
esophageal tumor1 / 1729057
gastrointestinal tumor10 / 11936983
germ cell tumor3 / 26384511
glioma0 / 1068830 
head and neck tumor17 / 136302124
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor14 / 96359145
lung tumor1 / 1031279
lymphoma1 / 7175513
non-neoplasia0 / 972500 
normal225 / 336030766
ovarian tumor4 / 7668252
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites2 / 4001549
bladder1 / 2975733
blood1 / 1234788
bone9 / 71655125
bone marrow3 / 4880161
brain51 / 110098946
cervix1 / 4817120
connective tissue6 / 14925540
ear3 / 16212185
embryonic tissue1 / 2157224
esophagus1 / 2020949
eye4 / 21105418
heart4 / 8962644
intestine22 / 23447293
kidney9 / 21177742
larynx0 / 241450 
liver40 / 207743192
lung21 / 33697462
lymph1 / 4427022
lymph node1 / 9161010
mammary gland9 / 15327158
mouth13 / 67052193
muscle19 / 107715176
nerve1 / 1576863
ovary5 / 10205148
pancreas11 / 21481251
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta10 / 28082535
prostate4 / 18934521
salivary gland0 / 201550 
skin15 / 21057471
spleen0 / 539520 
stomach10 / 96619103
testis7 / 33044221
thymus7 / 8113186
thyroid4 / 4747384
tonsil0 / 169990 
trachea18 / 52413343
umbilical cord0 / 136800 
uterus7 / 23287830
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202674_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.6
Adipocyte6.6
AdrenalCortex8.15
Adrenalgland6.15
Amygdala6.8
Appendix8.6
AtrioventricularNode6.6
BDCA4+_DentriticCells6.75
Bonemarrow7.25
BronchialEpithelialCells6.45
CD105+_Endothelial6.65
CD14+_Monocytes7.2
CD19+_BCells(neg._sel.)7
CD33+_Myeloid8.25
CD34+8
CD4+_Tcells7.2
CD56+_NKCells7.5
CD71+_EarlyErythroid6.45
CD8+_Tcells6.25
CardiacMyocytes10.4
Caudatenucleus6.2
Cerebellum5.6
CerebellumPeduncles8.2
CiliaryGanglion5.7
CingulateCortex7.15
Colorectaladenocarcinoma6.75
DorsalRootGanglion6.25
FetalThyroid6.85
Fetalbrain6.7
Fetalliver6.1
Fetallung5.2
GlobusPallidus5.55
Heart10.25
Hypothalamus6.95
Kidney6.15
Leukemia_chronicMyelogenousK-5626.05
Leukemia_promyelocytic-HL-605.95
Leukemialymphoblastic(MOLT-4)5.2
Liver9.85
Lung7.4
Lymphnode5.5
Lymphoma_burkitts(Daudi)9.05
Lymphoma_burkitts(Raji)10.2
MedullaOblongata6.1
OccipitalLobe6.05
OlfactoryBulb5.3
Ovary4.9
Pancreas5.6
PancreaticIslet7.35
ParietalLobe7.75
Pituitary7.8
Placenta6.65
Pons6.8
PrefrontalCortex8.2
Prostate7.7
Salivarygland5.65
SkeletalMuscle10.5
Skin6.3
SmoothMuscle7.7
Spinalcord7.2
SubthalamicNucleus6.55
SuperiorCervicalGanglion9.7
TemporalLobe6.8
Testis5.8
TestisGermCell5.35
TestisIntersitial5.85
TestisLeydigCell7.1
TestisSeminiferousTubule5.75
Thalamus7.05
Thymus5.05
Thyroid8.1
Tongue7.55
Tonsil6.8
Trachea5.65
TrigeminalGanglion8.05
Uterus5.35
UterusCorpus6.65
WholeBlood7.3
Wholebrain5.3
colon6.85
pineal_day8.32
pineal_night8.16
retina8.175
small_intestine6.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P205159
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.87 ± 0.62
Basal Forebrain7.43 ± 0.45
Basal Part of Pons6.64 ± 0.62
Cerebellar Cortex6.43 ± 0.34
Cerebellar Nuclei5.87 ± 0.84
Claustrum7.47 ± 0.45
Epithalamus5.92 ± 0.84
Frontal Lobe7.16 ± 0.66
Globus Pallidus5.6 ± 1.38
Hypothalamus6.12 ± 0.66
Insula7.14 ± 0.36
Limbic Lobe7.94 ± 0.75
Mesencephalon7.04 ± 0.71
Myelencephalon7.04 ± 0.8
Occipital Lobe8.14 ± 0.88
Parietal Lobe7.25 ± 0.68
Pontine Tegmentum7.07 ± 0.69
Striatum8.82 ± 0.41
Subthalamus5.9 ± 0.46
Temporal Lobe7.07 ± 0.52
Thalamus7.01 ± 0.52
White Matter5.51 ± 1.16
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Lmo7CBCerebellum16.8
18.89
Lmo7CTXCerebral cortex78.71
59.55
Lmo7HIPHippocampal region51.32
71.4
Lmo7HPFHippocampal formation65.06
77.34
Lmo7HYHypothalamus47.53
36.08
Lmo7LSXLateral septal complex52.3
34.35
Lmo7MBMidbrain23.52
19.5
Lmo7MYMedulla34.49
33.7
Lmo7OLFOlfactory bulb90.05
88.98
Lmo7PPons32.89
30.46
Lmo7PALPallidum44.43
36.8
Lmo7RHPRetrohippocampal region88.23
85.45
Lmo7sAMYStriatum-like amygdalar nuclei44.27
32.85
Lmo7STRStriatum81.61
60.62
Lmo7STRdStriatum dorsal region86.34
65.6
Lmo7STRvStriatum ventral region95.09
66.87
Lmo7THThalamus47.47
38.05
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
LMO7_HUMAN_1006 24 1006 1029 ATLSSTSGLDLMSESGEGEISPQR PRIDE
LMO7_HUMAN_1034 9 1034 1042 SQDQFSDMR PRIDE
LMO7_HUMAN_1111 12 1111 1122 AQETGHLVMDVR PRIDE
LMO7_HUMAN_1468 8 1468 1475 QQILQEMR PRIDE
LMO7_HUMAN_1491 16 1491 1506 SASVNKEPVSLPGIMR PRIDE
LMO7_HUMAN_1497 10 1497 1506 EPVSLPGIMR PRIDE
LMO7_HUMAN_815 16 815 830 RPPTMTVSEASYQSER PRIDE
PAp00156686 14 370 383 SMSDVSAEDVQNLR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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