Annotation Detail for CHCHD10
Basic Information Top
| Gene Symbol: | CHCHD10 ( C22orf16,MGC70831,N27C7-4 ) |
|---|---|
| Gene Full Name: | coiled-coil-helix-coiled-coil-helix domain containing 10 |
| Band: | 22q11.23 |
| Quick Links | Entrez ID:400916; OMIM: NA; Uniprot ID:CHC10_HUMAN; ENSEMBL ID: ENSG00000241579,ENSG00000242131; HGNC ID: 15559 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.66915
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 11 / 564012 | 19 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 158 / 1939121 | 81 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 8 / 114246 | 70 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 9 / 119369 | 75 | |
| germ cell tumor | 5 / 263845 | 18 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 11 / 95842 | 114 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 5 / 71755 | 69 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 183 / 3360307 | 54 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 13 / 104616 | 124 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 6 / 40015 | 149 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 29 / 1100989 | 26 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 23 / 211054 | 108 | |
| heart | 2 / 89626 | 22 | |
| intestine | 31 / 234472 | 132 | |
| kidney | 35 / 211777 | 165 | |
| larynx | 0 / 24145 | 0 | |
| liver | 6 / 207743 | 28 | |
| lung | 17 / 336974 | 50 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 11 / 91610 | 120 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 30 / 107715 | 278 |  |
| nerve | 0 / 15768 | 0 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 37 / 214812 | 172 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 14 / 280825 | 49 | |
| prostate | 13 / 189345 | 68 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 4 / 53952 | 74 | |
| stomach | 2 / 96619 | 20 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_6080_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.08 ± 0.24 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 9.23 ± 0.17 | |
| Basal Part of Pons | 9.44 ± 0.36 | |
| Cerebellar Cortex | 8.96 ± 0.19 | |
| Cerebellar Nuclei | 9.49 ± 0.19 | |
| Claustrum | 8.62 ± 0.45 | |
| Epithalamus | 9.24 ± 0.2 | |
| Frontal Lobe | 9.41 ± 0.37 | |
| Globus Pallidus | 9.33 ± 0.39 | |
| Hypothalamus | 9.59 ± 0.26 | |
| Insula | 9.34 ± 0.29 | |
| Limbic Lobe | 9.04 ± 0.49 | |
| Mesencephalon | 9.22 ± 0.38 | |
| Myelencephalon | 9.2 ± 0.42 | |
| Occipital Lobe | 8.9 ± 0.4 | |
| Parietal Lobe | 9.37 ± 0.39 | |
| Pontine Tegmentum | 9.33 ± 0.39 | |
| Striatum | 9.43 ± 0.39 | |
| Subthalamus | 9.7 ± 0.17 | |
| Temporal Lobe | 9.33 ± 0.35 | |
| Thalamus | 9.37 ± 0.31 | |
| White Matter | 7.64 ± 0.1 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ndg2 | CB | Cerebellum | 34.24 | |
| 50.79 | | |||
| Ndg2 | CTX | Cerebral cortex | 72.51 | |
| 42.67 | | |||
| Ndg2 | HIP | Hippocampal region | 31.11 | |
| 32.03 | | |||
| Ndg2 | HPF | Hippocampal formation | 48.58 | |
| 40.3 | | |||
| Ndg2 | HY | Hypothalamus | 65.91 | |
| 37.08 | | |||
| Ndg2 | LSX | Lateral septal complex | 27.46 | |
| 9.48 | | |||
| Ndg2 | MB | Midbrain | 60.25 | |
| 45.3 | | |||
| Ndg2 | MY | Medulla | 80.12 | |
| 79.76 | | |||
| Ndg2 | OLF | Olfactory bulb | 66.3 | |
| 43.18 | | |||
| Ndg2 | P | Pons | 69.4 | |
| 65.14 | | |||
| Ndg2 | PAL | Pallidum | 70.44 | |
| 59.12 | | |||
| Ndg2 | RHP | Retrohippocampal region | 76.61 | |
| 52.11 | | |||
| Ndg2 | sAMY | Striatum-like amygdalar nuclei | 49.41 | |
| 26.01 | | |||
| Ndg2 | STR | Striatum | 93.4 | |
| 49 | | |||
| Ndg2 | STRd | Striatum dorsal region | 100 | |
| 54.46 | | |||
| Ndg2 | STRv | Striatum ventral region | 96.05 | |
| 56.39 | | |||
| Ndg2 | TH | Thalamus | 67.58 | |
| 48.49 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00076071 | 26 | 108 | 133 | QFLDCSTTQSDLSLCEGFSEALKQCK | Peptide Atlas |