AutismKB 2.0

Annotation Detail for LOC400986


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Basic Information Top
Gene Symbol:LOC400986 ( FLJ42107 )
Gene Full Name: -
Band: 2q11.1
Quick LinksEntrez ID:400986; OMIM: NA; Uniprot ID:; ENSEMBL ID: ENSG00000174501; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst1 / 6231916
fetus21 / 56401237
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult65 / 193912133
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor5 / 11424643
esophageal tumor1 / 1729057
gastrointestinal tumor1 / 1193698
germ cell tumor2 / 2638457
glioma2 / 10688318
head and neck tumor1 / 1363027
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor2 / 9635920
lung tumor1 / 1031279
lymphoma3 / 7175541
non-neoplasia0 / 972500 
normal112 / 336030733
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor26 / 125191207
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood3 / 12347824
bone1 / 7165513
bone marrow0 / 488010 
brain26 / 110098923
cervix0 / 481710 
connective tissue28 / 149255187
ear2 / 16212123
embryonic tissue5 / 21572223
esophagus1 / 2020949
eye5 / 21105423
heart1 / 8962611
intestine6 / 23447225
kidney1 / 2117774
larynx0 / 241450 
liver32 / 207743154
lung6 / 33697417
lymph0 / 442700 
lymph node5 / 9161054
mammary gland7 / 15327145
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas2 / 2148129
parathyroid2 / 2053997
pharynx3 / 4132872
pituitary gland0 / 165850 
placenta1 / 2808253
prostate6 / 18934531
salivary gland0 / 201550 
skin1 / 2105744
spleen1 / 5395218
stomach4 / 9661941
testis11 / 33044233
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus4 / 23287817
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 214723_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.15
Adipocyte7.8
AdrenalCortex13.45
Adrenalgland8.4
Amygdala8.65
Appendix12.2
AtrioventricularNode12.25
BDCA4+_DentriticCells9.2
Bonemarrow10.7
BronchialEpithelialCells9
CD105+_Endothelial9.35
CD14+_Monocytes10.2
CD19+_BCells(neg._sel.)12
CD33+_Myeloid11.25
CD34+11.25
CD4+_Tcells10.4
CD56+_NKCells14.05
CD71+_EarlyErythroid9.75
CD8+_Tcells36.85
CardiacMyocytes19.15
Caudatenucleus8.1
Cerebellum8.05
CerebellumPeduncles12.5
CiliaryGanglion13.85
CingulateCortex11.75
Colorectaladenocarcinoma8.15
DorsalRootGanglion9.6
FetalThyroid11.4
Fetalbrain12.35
Fetalliver7.3
Fetallung6.85
GlobusPallidus8.45
Heart17.5
Hypothalamus9
Kidney9
Leukemia_chronicMyelogenousK-5627.55
Leukemia_promyelocytic-HL-6014.55
Leukemialymphoblastic(MOLT-4)11.25
Liver15.45
Lung9.2
Lymphnode7.8
Lymphoma_burkitts(Daudi)25.8
Lymphoma_burkitts(Raji)15.55
MedullaOblongata9.45
OccipitalLobe8.35
OlfactoryBulb10.6
Ovary8.75
Pancreas8.25
PancreaticIslet10.1
ParietalLobe11.35
Pituitary11.05
Placenta7.2
Pons9.75
PrefrontalCortex11.1
Prostate9.95
Salivarygland7.95
SkeletalMuscle16.55
Skin10.55
SmoothMuscle10.2
Spinalcord8.7
SubthalamicNucleus9.65
SuperiorCervicalGanglion17
TemporalLobe9.35
Testis7.9
TestisGermCell8.1
TestisIntersitial8.65
TestisLeydigCell13.2
TestisSeminiferousTubule10.05
Thalamus10.05
Thymus7.25
Thyroid9.85
Tongue12.15
Tonsil9.6
Trachea7.75
TrigeminalGanglion13.55
Uterus15.1
UterusCorpus10.5
WholeBlood9.55
Wholebrain7
colon9.25
pineal_day37.48
pineal_night18.4
retina10.175
small_intestine8.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P210131
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.54 ± 0.3
Basal Forebrain9.69 ± 0.3
Basal Part of Pons9.46 ± 0.37
Cerebellar Cortex9.82 ± 0.18
Cerebellar Nuclei9.07 ± 0.35
Claustrum9.7 ± 0.44
Epithalamus9.62 ± 0.33
Frontal Lobe9.27 ± 0.26
Globus Pallidus9.03 ± 0.16
Hypothalamus9.42 ± 0.33
Insula9.42 ± 0.23
Limbic Lobe9.51 ± 0.4
Mesencephalon9.48 ± 0.36
Myelencephalon9.41 ± 0.32
Occipital Lobe9.84 ± 0.44
Parietal Lobe9.43 ± 0.32
Pontine Tegmentum9.32 ± 0.32
Striatum9.67 ± 0.4
Subthalamus9.01 ± 0.51
Temporal Lobe9.48 ± 0.22
Thalamus9.29 ± 0.3
White Matter10.15 ± 0.21
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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