Annotation Detail for LSAMP
Basic Information Top
| Gene Symbol: | LSAMP ( FLJ34254,FLJ35396,FLJ37216,FLJ54658,IGLON3,LAMP ) |
|---|---|
| Gene Full Name: | limbic system-associated membrane protein |
| Band: | 3q13.31 |
| Quick Links | Entrez ID:4045; OMIM: 603241; Uniprot ID:LSAMP_HUMAN; ENSEMBL ID: ENSG00000185565; HGNC ID: 6705 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.26409
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 24 / 564012 | 42 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 56 / 1939121 | 28 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 145 / 3360307 | 43 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 6 / 124949 | 48 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 63 / 1100989 | 57 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 17 / 211054 | 80 | |
| heart | 1 / 89626 | 11 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 11 / 336974 | 32 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 7 / 91610 | 76 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 7 / 210574 | 33 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 214460_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 5.35 | |
| Adipocyte | 4.65 | |
| AdrenalCortex | 5.15 | |
| Adrenalgland | 3.95 | |
| Amygdala | 5 | |
| Appendix | 4.75 | |
| AtrioventricularNode | 3.65 | |
| BDCA4+_DentriticCells | 4.9 | |
| Bonemarrow | 4.8 | |
| BronchialEpithelialCells | 4.55 | |
| CD105+_Endothelial | 4.6 | |
| CD14+_Monocytes | 4.9 | |
| CD19+_BCells(neg._sel.) | 4.9 | |
| CD33+_Myeloid | 5.7 | |
| CD34+ | 5.9 | |
| CD4+_Tcells | 4.8 | |
| CD56+_NKCells | 5.35 | |
| CD71+_EarlyErythroid | 4.35 | |
| CD8+_Tcells | 4.3 | |
| CardiacMyocytes | 5.8 | |
| Caudatenucleus | 4.2 | |
| Cerebellum | 3.8 | |
| CerebellumPeduncles | 5.35 | |
| CiliaryGanglion | 3.4 | |
| CingulateCortex | 5.9 | |
| Colorectaladenocarcinoma | 4.65 | |
| DorsalRootGanglion | 3.55 | |
| FetalThyroid | 4.5 | |
| Fetalbrain | 4.6 | |
| Fetalliver | 4.05 | |
| Fetallung | 3.75 | |
| GlobusPallidus | 3.4 | |
| Heart | 6.1 | |
| Hypothalamus | 5.1 | |
| Kidney | 3.9 | |
| Leukemia_chronicMyelogenousK-562 | 4.2 | |
| Leukemia_promyelocytic-HL-60 | 4.15 | |
| Leukemialymphoblastic(MOLT-4) | 3.7 | |
| Liver | 6.2 | |
| Lung | 5 | |
| Lymphnode | 4 | |
| Lymphoma_burkitts(Daudi) | 6.05 | |
| Lymphoma_burkitts(Raji) | 6.8 | |
| MedullaOblongata | 4.3 | |
| OccipitalLobe | 4.2 | |
| OlfactoryBulb | 3.7 | |
| Ovary | 3.1 | |
| Pancreas | 3.75 | |
| PancreaticIslet | 5 | |
| ParietalLobe | 5.05 | |
| Pituitary | 5.45 | |
| Placenta | 4.65 | |
| Pons | 4.45 | |
| PrefrontalCortex | 5.7 | |
| Prostate | 5.55 | |
| Salivarygland | 3.75 | |
| SkeletalMuscle | 5.65 | |
| Skin | 3.7 | |
| SmoothMuscle | 5.25 | |
| Spinalcord | 5 | |
| SubthalamicNucleus | 4.3 | |
| SuperiorCervicalGanglion | 5.2 | |
| TemporalLobe | 4.35 | |
| Testis | 4 | |
| TestisGermCell | 3.8 | |
| TestisIntersitial | 3.9 | |
| TestisLeydigCell | 4.6 | |
| TestisSeminiferousTubule | 4.05 | |
| Thalamus | 4.75 | |
| Thymus | 3.6 | |
| Thyroid | 5.75 | |
| Tongue | 4.65 | |
| Tonsil | 4.55 | |
| Trachea | 3.9 | |
| TrigeminalGanglion | 4.85 | |
| Uterus | 3.75 | |
| UterusCorpus | 4.2 | |
| WholeBlood | 5.05 | |
| Wholebrain | 3.95 | |
| colon | 4.65 | |
| pineal_day | 17.94 | |
| pineal_night | 17.1 | |
| retina | 5.825 | |
| small_intestine | 4.45 | |
- Probe name: CUST_10128_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.92 ± 0.23 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.5 ± 0.15 | |
| Basal Part of Pons | 9.06 ± 0.16 | |
| Cerebellar Cortex | 8.7 ± 0.25 | |
| Cerebellar Nuclei | 8.31 ± 0.34 | |
| Claustrum | 8.98 ± 0.35 | |
| Epithalamus | 8.35 ± 0.47 | |
| Frontal Lobe | 8.89 ± 0.33 | |
| Globus Pallidus | 8.94 ± 0.25 | |
| Hypothalamus | 8.72 ± 0.18 | |
| Insula | 8.8 ± 0.33 | |
| Limbic Lobe | 8.93 ± 0.34 | |
| Mesencephalon | 8.63 ± 0.31 | |
| Myelencephalon | 8.71 ± 0.34 | |
| Occipital Lobe | 8.49 ± 0.25 | |
| Parietal Lobe | 8.72 ± 0.29 | |
| Pontine Tegmentum | 8.76 ± 0.25 | |
| Striatum | 8.73 ± 0.33 | |
| Subthalamus | 8.57 ± 0.15 | |
| Temporal Lobe | 8.74 ± 0.28 | |
| Thalamus | 8.8 ± 0.38 | |
| White Matter | 7.63 ± 0.27 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Lsamp | CB | Cerebellum | 16.01 | |
| 18.72 | | |||
| Lsamp | CTX | Cerebral cortex | 7.94 | |
| 7.46 | | |||
| Lsamp | HIP | Hippocampal region | 33.08 | |
| 33.54 | | |||
| Lsamp | HPF | Hippocampal formation | 24.18 | |
| 22.94 | | |||
| Lsamp | HY | Hypothalamus | 10.35 | |
| 8.92 | | |||
| Lsamp | LSX | Lateral septal complex | 5 | |
| 3.78 | | |||
| Lsamp | MB | Midbrain | 9 | |
| 9.83 | | |||
| Lsamp | MY | Medulla | 10.19 | |
| 11.82 | | |||
| Lsamp | OLF | Olfactory bulb | 14.16 | |
| 13.07 | | |||
| Lsamp | P | Pons | 11.76 | |
| 13.17 | | |||
| Lsamp | PAL | Pallidum | 4.51 | |
| 4.51 | | |||
| Lsamp | RHP | Retrohippocampal region | 9.19 | |
| 8.18 | | |||
| Lsamp | sAMY | Striatum-like amygdalar nuclei | 11.61 | |
| 10.06 | | |||
| Lsamp | STR | Striatum | 2.21 | |
| 1.92 | | |||
| Lsamp | STRd | Striatum dorsal region | 0.51 | |
| 0.48 | | |||
| Lsamp | STRv | Striatum ventral region | 1.59 | |
| 1.42 | | |||
| Lsamp | TH | Thalamus | 7.89 | |
| 7.7 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00040043 | 16 | 174 | 189 | EFEGEEEYLEILGITR | Peptide Atlas |