AutismKB 2.0

Annotation Detail for BCAM


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Basic Information Top
Gene Symbol:BCAM ( AU,CD239,LU,MSK19 )
Gene Full Name: basal cell adhesion molecule (Lutheran blood group)
Band: 19q13.32
Quick LinksEntrez ID:4059; OMIM: 612773; Uniprot ID:BCAM_HUMAN; ENSEMBL ID: ENSG00000187244; HGNC ID: 6722
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body9 / 70761127
blastocyst5 / 6231980
fetus12 / 56401221
neonate0 / 310970 
infant0 / 236200 
juvenile3 / 5555653
adult267 / 1939121137
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor8 / 9417884
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor16 / 114246140
esophageal tumor2 / 17290115
gastrointestinal tumor1 / 1193698
germ cell tumor6 / 26384522
glioma5 / 10688346
head and neck tumor67 / 136302491
kidney tumor14 / 68959203
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor25 / 103127242
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal167 / 336030749
ovarian tumor31 / 76682404
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer7 / 10268068
retinoblastoma1 / 4635621
skin tumor8 / 12494964
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor39 / 90257432
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone1 / 7165513
bone marrow2 / 4880140
brain19 / 110098917
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue18 / 21572283
esophagus2 / 2020998
eye4 / 21105418
heart1 / 8962611
intestine20 / 23447285
kidney15 / 21177770
larynx6 / 24145248
liver2 / 2077439
lung34 / 336974100
lymph0 / 442700 
lymph node0 / 916100 
mammary gland26 / 153271169
mouth6 / 6705289
muscle0 / 1077150 
nerve3 / 15768190
ovary39 / 102051382
pancreas11 / 21481251
parathyroid0 / 205390 
pharynx53 / 413281282
pituitary gland0 / 165850 
placenta45 / 280825160
prostate9 / 18934547
salivary gland0 / 201550 
skin11 / 21057452
spleen0 / 539520 
stomach1 / 9661910
testis1 / 3304423
thymus0 / 811310 
thyroid8 / 47473168
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus42 / 232878180
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 40093_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.7
Adipocyte15.5
AdrenalCortex19.15
Adrenalgland17.65
Amygdala16.7
Appendix17.95
AtrioventricularNode13.55
BDCA4+_DentriticCells9.55
Bonemarrow17.1
BronchialEpithelialCells16
CD105+_Endothelial11.15
CD14+_Monocytes11.35
CD19+_BCells(neg._sel.)8.05
CD33+_Myeloid14.05
CD34+12.4
CD4+_Tcells10.15
CD56+_NKCells13.35
CD71+_EarlyErythroid12.3
CD8+_Tcells9.9
CardiacMyocytes18.7
Caudatenucleus14.7
Cerebellum15.05
CerebellumPeduncles21.65
CiliaryGanglion13.65
CingulateCortex16.95
Colorectaladenocarcinoma21.9
DorsalRootGanglion14.8
FetalThyroid48.55
Fetalbrain16
Fetalliver23.3
Fetallung30.5
GlobusPallidus12.8
Heart36.2
Hypothalamus17.85
Kidney36.2
Leukemia_chronicMyelogenousK-56214.45
Leukemia_promyelocytic-HL-6011.6
Leukemialymphoblastic(MOLT-4)12.8
Liver21.8
Lung108
Lymphnode15.6
Lymphoma_burkitts(Daudi)19.45
Lymphoma_burkitts(Raji)20.95
MedullaOblongata14.4
OccipitalLobe14.35
OlfactoryBulb16.4
Ovary11.55
Pancreas13.95
PancreaticIslet24.25
ParietalLobe17.95
Pituitary19.15
Placenta26.1
Pons14.4
PrefrontalCortex20.65
Prostate83.75
Salivarygland30.65
SkeletalMuscle20
Skin15.5
SmoothMuscle15.95
Spinalcord20.45
SubthalamicNucleus14.95
SuperiorCervicalGanglion22.1
TemporalLobe15.05
Testis22.75
TestisGermCell14.4
TestisIntersitial14.45
TestisLeydigCell17.05
TestisSeminiferousTubule20.2
Thalamus23.05
Thymus13.9
Thyroid521.6
Tongue19.3
Tonsil15.25
Trachea28.25
TrigeminalGanglion15.7
Uterus14.2
UterusCorpus19.55
WholeBlood14.85
Wholebrain14
colon16.25
pineal_day18.96
pineal_night18.98
retina20.425
small_intestine15.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1183_PI416573500
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.21 ± 0.46
Basal Forebrain5.05 ± 0.35
Basal Part of Pons4.7 ± 0.31
Cerebellar Cortex4.79 ± 0.44
Cerebellar Nuclei5.11 ± 0.41
Claustrum5.21 ± 0.5
Epithalamus4.62 ± 0.38
Frontal Lobe4.93 ± 0.45
Globus Pallidus5.51 ± 0.42
Hypothalamus4.65 ± 0.54
Insula4.67 ± 0.59
Limbic Lobe4.95 ± 0.56
Mesencephalon5.01 ± 0.51
Myelencephalon4.99 ± 0.5
Occipital Lobe5.07 ± 0.48
Parietal Lobe4.94 ± 0.44
Pontine Tegmentum4.96 ± 0.46
Striatum4.97 ± 0.57
Subthalamus4.25 ± 0.85
Temporal Lobe4.83 ± 0.5
Thalamus5.06 ± 0.4
White Matter5.69 ± 0.41
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
BcamCBCerebellum2.22
3.22
BcamCTXCerebral cortex2.45
2.62
BcamHIPHippocampal region2.86
3.77
BcamHPFHippocampal formation2.68
3.22
BcamHYHypothalamus4.09
4.38
BcamLSXLateral septal complex1.94
1.77
BcamMBMidbrain3.03
3.68
BcamMYMedulla5.78
8.54
BcamOLFOlfactory bulb1.96
2.25
BcamPPons3.92
5.87
BcamPALPallidum1.8
1.87
BcamRHPRetrohippocampal region2.35
2.42
BcamsAMYStriatum-like amygdalar nuclei2.37
2.39
BcamSTRStriatum1.97
1.68
BcamSTRdStriatum dorsal region2
1.74
BcamSTRvStriatum ventral region1.5
0.97
BcamTHThalamus3.36
3.61
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
BCAM_HUMAN_110 12 110 121 LVLAEAQVGDER PRIDE
BCAM_HUMAN_129 12 129 140 AGAAGTAEATAR PRIDE
BCAM_HUMAN_157 19 157 175 GTLSVMEDSAQEIATCNSR PRIDE
BCAM_HUMAN_192 16 192 207 LEVPVEMNPEGYMTSR PRIDE
BCAM_HUMAN_339 14 339 352 VEDYDAADDVQLSK PRIDE
BCAM_HUMAN_35 11 35 45 LSVPPLVEVMR PRIDE
BCAM_HUMAN_358 13 358 370 VAYLDPLELSEGK PRIDE
BCAM_HUMAN_452 7 452 458 TAEIEPK PRIDE
BCAM_HUMAN_511 7 511 517 VTSALSR PRIDE
BCAM_HUMAN_72 6 72 77 SGARPR PRIDE
BCAM_HUMAN_78 19 78 96 LASAEMQGSELQVTMHDTR PRIDE
PAp00001522 16 232 247 DASFHCAAHYSLPEGR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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