AutismKB 2.0

Annotation Detail for ARNTL


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Basic Information Top
Gene Symbol:ARNTL ( BMAL1,BMAL1c,JAP3,MGC47515,MOP3,PASD3,TIC,bHLHe5 )
Gene Full Name: aryl hydrocarbon receptor nuclear translocator-like
Band: 11p15.3
Quick LinksEntrez ID:406; OMIM: 602550; Uniprot ID:BMAL1_HUMAN; ENSEMBL ID: ENSG00000133794; HGNC ID: 701
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus26 / 56401246
neonate4 / 31097128
infant1 / 2362042
juvenile1 / 5555617
adult45 / 193912123
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor2 / 3436658
chondrosarcoma1 / 8282312
colorectal tumor1 / 1142468
esophageal tumor1 / 1729057
gastrointestinal tumor1 / 1193698
germ cell tumor4 / 26384515
glioma1 / 1068839
head and neck tumor10 / 13630273
kidney tumor2 / 6895929
leukemia1 / 9584210
liver tumor2 / 9635920
lung tumor3 / 10312729
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal134 / 336030739
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood10 / 12347880
bone4 / 7165555
bone marrow0 / 488010 
brain48 / 110098943
cervix2 / 4817141
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus1 / 2020949
eye13 / 21105461
heart1 / 8962611
intestine5 / 23447221
kidney7 / 21177733
larynx0 / 241450 
liver5 / 20774324
lung8 / 33697423
lymph0 / 442700 
lymph node1 / 9161010
mammary gland0 / 1532710 
mouth10 / 67052149
muscle3 / 10771527
nerve0 / 157680 
ovary1 / 1020519
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta1 / 2808253
prostate1 / 1893455
salivary gland0 / 201550 
skin2 / 2105749
spleen5 / 5395292
stomach4 / 9661941
testis5 / 33044215
thymus10 / 81131123
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus6 / 23287825
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209824_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts49.65
Adipocyte63.7
AdrenalCortex45.95
Adrenalgland56.35
Amygdala48.8
Appendix43.25
AtrioventricularNode28.75
BDCA4+_DentriticCells42.05
Bonemarrow37.3
BronchialEpithelialCells33.15
CD105+_Endothelial23.35
CD14+_Monocytes51.45
CD19+_BCells(neg._sel.)31
CD33+_Myeloid52.8
CD34+29.75
CD4+_Tcells196.55
CD56+_NKCells192.7
CD71+_EarlyErythroid16.95
CD8+_Tcells189.85
CardiacMyocytes49.75
Caudatenucleus34.7
Cerebellum42.7
CerebellumPeduncles48.05
CiliaryGanglion27.05
CingulateCortex49.25
Colorectaladenocarcinoma38.15
DorsalRootGanglion29.35
FetalThyroid33.55
Fetalbrain51.8
Fetalliver33.25
Fetallung30.55
GlobusPallidus34.25
Heart48.25
Hypothalamus41.35
Kidney30.8
Leukemia_chronicMyelogenousK-56227.3
Leukemia_promyelocytic-HL-6023.6
Leukemialymphoblastic(MOLT-4)28.25
Liver51.05
Lung42.05
Lymphnode32.9
Lymphoma_burkitts(Daudi)40.15
Lymphoma_burkitts(Raji)52.65
MedullaOblongata62.2
OccipitalLobe36
OlfactoryBulb28.65
Ovary29.15
Pancreas30.75
PancreaticIslet43.5
ParietalLobe57.05
Pituitary44.45
Placenta32
Pons44.8
PrefrontalCortex56.6
Prostate43.8
Salivarygland30.3
SkeletalMuscle44.2
Skin32.9
SmoothMuscle40.8
Spinalcord43.9
SubthalamicNucleus38.2
SuperiorCervicalGanglion44.2
TemporalLobe51.7
Testis38.05
TestisGermCell40.9
TestisIntersitial27.25
TestisLeydigCell37.6
TestisSeminiferousTubule32.2
Thalamus47.15
Thymus48.9
Thyroid44.65
Tongue36.95
Tonsil36.65
Trachea29.85
TrigeminalGanglion29.55
Uterus29.4
UterusCorpus34.25
WholeBlood124.35
Wholebrain100.6
colon37.45
pineal_day66.26
pineal_night61.76
retina47
small_intestine35.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14423_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.6 ± 0.65
Basal Forebrain4.76 ± 0.77
Basal Part of Pons4.51 ± 0.44
Cerebellar Cortex5.1 ± 0.34
Cerebellar Nuclei4.51 ± 0.61
Claustrum4.29 ± 0.8
Epithalamus4.72 ± 0.73
Frontal Lobe4.95 ± 0.57
Globus Pallidus3.42 ± 0.52
Hypothalamus4.64 ± 0.57
Insula5.16 ± 0.46
Limbic Lobe4.42 ± 0.63
Mesencephalon4.7 ± 0.59
Myelencephalon4.71 ± 0.65
Occipital Lobe4.66 ± 0.61
Parietal Lobe4.92 ± 0.67
Pontine Tegmentum4.74 ± 0.7
Striatum4.06 ± 0.63
Subthalamus4.85 ± 0.33
Temporal Lobe4.95 ± 0.52
Thalamus4.98 ± 0.64
White Matter2.97 ± 0.82
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
ArntlCBCerebellum87.33
82.32
ArntlCTXCerebral cortex90.52
69.64
ArntlHIPHippocampal region70.54
51.82
ArntlHPFHippocampal formation79.08
60.07
ArntlHYHypothalamus64.49
31.57
ArntlLSXLateral septal complex50.2
21.81
ArntlMBMidbrain62.64
43.26
ArntlMYMedulla74.93
63.1
ArntlOLFOlfactory bulb89.27
56.85
ArntlPPons70.69
55.51
ArntlPALPallidum47.74
29.86
ArntlRHPRetrohippocampal region84.65
67.66
ArntlsAMYStriatum-like amygdalar nuclei61.15
32.96
ArntlSTRStriatum53.86
26.98
ArntlSTRdStriatum dorsal region56.87
28.76
ArntlSTRvStriatum ventral region42.62
21.33
ArntlTHThalamus90.75
69.09
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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