AutismKB 2.0

Annotation Detail for EPCAM


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Basic Information Top
Gene Symbol:EPCAM ( DIAR5,EGP-2,EGP314,EGP40,ESA,GA733-2,HNPCC8,KS1/4,KSA,M4S1,MIC18,MK-1,TACSTD1,TROP1 )
Gene Full Name: epithelial cell adhesion molecule
Band: 2p21
Quick LinksEntrez ID:4072; OMIM: 185535; Uniprot ID:EPCAM_HUMAN; ENSEMBL ID: ENSG00000119888; HGNC ID: 11529
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body10 / 70761141
blastocyst10 / 62319160
fetus21 / 56401237
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult209 / 1939121107
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor15 / 94178159
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor84 / 114246735
esophageal tumor5 / 17290289
gastrointestinal tumor68 / 119369569
germ cell tumor5 / 26384518
glioma0 / 1068830 
head and neck tumor13 / 13630295
kidney tumor4 / 6895958
leukemia1 / 9584210
liver tumor13 / 96359134
lung tumor3 / 10312729
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal191 / 336030756
ovarian tumor9 / 76682117
pancreatic tumor18 / 104616172
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer5 / 10268048
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor54 / 90257598
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites12 / 40015299
bladder5 / 29757168
blood1 / 1234788
bone0 / 716550 
bone marrow0 / 488010 
brain7 / 11009896
cervix0 / 481710 
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue30 / 215722139
esophagus5 / 20209247
eye3 / 21105414
heart1 / 8962611
intestine191 / 234472814
kidney22 / 211777103
larynx3 / 24145124
liver14 / 20774367
lung28 / 33697483
lymph0 / 442700 
lymph node4 / 9161043
mammary gland20 / 153271130
mouth0 / 670520 
muscle0 / 1077150 
nerve1 / 1576863
ovary15 / 102051146
pancreas63 / 214812293
parathyroid11 / 20539535
pharynx0 / 413280 
pituitary gland3 / 16585180
placenta5 / 28082517
prostate10 / 18934552
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach74 / 96619765
testis10 / 33044230
thymus0 / 811310 
thyroid9 / 47473189
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus58 / 232878249
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201839_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.55
Adipocyte8.95
AdrenalCortex13.7
Adrenalgland8.9
Amygdala10.75
Appendix15.3
AtrioventricularNode10.9
BDCA4+_DentriticCells8.1
Bonemarrow11.5
BronchialEpithelialCells113.8
CD105+_Endothelial281.65
CD14+_Monocytes10.1
CD19+_BCells(neg._sel.)11.3
CD33+_Myeloid10.6
CD34+78.25
CD4+_Tcells9.4
CD56+_NKCells9.4
CD71+_EarlyErythroid16.25
CD8+_Tcells7.85
CardiacMyocytes21
Caudatenucleus8.55
Cerebellum7.65
CerebellumPeduncles12.05
CiliaryGanglion8.95
CingulateCortex10.2
Colorectaladenocarcinoma1974.95
DorsalRootGanglion9.25
FetalThyroid321.85
Fetalbrain24.4
Fetalliver24.8
Fetallung164.35
GlobusPallidus7.6
Heart18.45
Hypothalamus10.1
Kidney138.4
Leukemia_chronicMyelogenousK-56275.3
Leukemia_promyelocytic-HL-608.05
Leukemialymphoblastic(MOLT-4)6.5
Liver14
Lung102.6
Lymphnode7.8
Lymphoma_burkitts(Daudi)12.8
Lymphoma_burkitts(Raji)16.15
MedullaOblongata8.6
OccipitalLobe8.3
OlfactoryBulb7
Ovary7.35
Pancreas1378
PancreaticIslet752.45
ParietalLobe11.15
Pituitary227.2
Placenta8.9
Pons9.6
PrefrontalCortex10.8
Prostate404
Salivarygland65.6
SkeletalMuscle15.2
Skin11.35
SmoothMuscle10.75
Spinalcord10.15
SubthalamicNucleus9.75
SuperiorCervicalGanglion14.95
TemporalLobe9.2
Testis8.4
TestisGermCell9.6
TestisIntersitial15.2
TestisLeydigCell15.55
TestisSeminiferousTubule8.4
Thalamus10.15
Thymus6.75
Thyroid3682.6
Tongue11.1
Tonsil9.9
Trachea126.65
TrigeminalGanglion16.1
Uterus16.6
UterusCorpus10.7
WholeBlood10.15
Wholebrain7.2
colon5455.7
pineal_day12.42
pineal_night13.38
retina11.85
small_intestine3458.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14251_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.48 ± 0.63
Basal Forebrain4.27 ± 0.54
Basal Part of Pons2.94 ± 0.51
Cerebellar Cortex3.44 ± 0.45
Cerebellar Nuclei3.28 ± 0.57
Claustrum3.85 ± 0.61
Epithalamus3.77 ± 0.48
Frontal Lobe3.9 ± 0.77
Globus Pallidus4.14 ± 0.61
Hypothalamus5.18 ± 0.46
Insula4.03 ± 0.54
Limbic Lobe4.73 ± 1
Mesencephalon4.46 ± 0.57
Myelencephalon4.26 ± 0.95
Occipital Lobe4.38 ± 0.7
Parietal Lobe4.08 ± 0.77
Pontine Tegmentum4.65 ± 0.75
Striatum6.3 ± 0.59
Subthalamus3.77 ± 0.1
Temporal Lobe4.24 ± 0.69
Thalamus3.34 ± 0.8
White Matter4.86 ± 0.62
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tacstd1CBCerebellum0.61
1.02
Tacstd1CTXCerebral cortex1.47
1.78
Tacstd1HIPHippocampal region1.66
1.52
Tacstd1HPFHippocampal formation1.19
1.03
Tacstd1HYHypothalamus0.33
0.37
Tacstd1LSXLateral septal complex0.24
0.24
Tacstd1MBMidbrain0.3
0.45
Tacstd1MYMedulla0.28
0.54
Tacstd1OLFOlfactory bulb2.05
3.54
Tacstd1PPons0.36
0.6
Tacstd1PALPallidum0.54
0.56
Tacstd1RHPRetrohippocampal region0.33
0.29
Tacstd1sAMYStriatum-like amygdalar nuclei0.63
0.75
Tacstd1STRStriatum0.35
0.32
Tacstd1STRdStriatum dorsal region0.33
0.29
Tacstd1STRvStriatum ventral region0.31
0.21
Tacstd1THThalamus0.3
0.45
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00000480 25 82 106 AKPEGALQNNDGLYDPDCDESGLFK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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