AutismKB 2.0

Annotation Detail for CAPRIN1


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Basic Information Top
Gene Symbol:CAPRIN1 ( GPIAP1,GPIP137,M11S1,RNG105,caprin-1,p137GPI )
Gene Full Name: cell cycle associated protein 1
Band: 11p13
Quick LinksEntrez ID:4076; OMIM: 601178; Uniprot ID:CAPR1_HUMAN; ENSEMBL ID: ENSG00000135387; HGNC ID: 6743
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body21 / 70761296
blastocyst17 / 62319272
fetus196 / 564012347
neonate12 / 31097385
infant7 / 23620296
juvenile17 / 55556305
adult377 / 1939121194
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma3 / 17475171
breast (mammary gland) tumor22 / 94178233
cervical tumor19 / 34366552
chondrosarcoma14 / 82823169
colorectal tumor33 / 114246288
esophageal tumor5 / 17290289
gastrointestinal tumor18 / 119369150
germ cell tumor110 / 263845416
glioma21 / 106883196
head and neck tumor52 / 136302381
kidney tumor12 / 68959174
leukemia33 / 95842344
liver tumor20 / 96359207
lung tumor15 / 103127145
lymphoma13 / 71755181
non-neoplasia13 / 97250133
normal789 / 3360307234
ovarian tumor19 / 76682247
pancreatic tumor12 / 104616114
primitive neuroectodermal tumor of the CNS22 / 125680175
prostate cancer19 / 102680185
retinoblastoma12 / 46356258
skin tumor32 / 124949256
soft tissue/muscle tissue tumor21 / 125191167
uterine tumor12 / 90257132
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland3 / 3319790
ascites3 / 4001574
bladder12 / 29757403
blood22 / 123478178
bone23 / 71655320
bone marrow17 / 48801348
brain326 / 1100989296
cervix19 / 48171394
connective tissue25 / 149255167
ear2 / 16212123
embryonic tissue71 / 215722329
esophagus5 / 20209247
eye46 / 211054217
heart15 / 89626167
intestine51 / 234472217
kidney36 / 211777169
larynx9 / 24145372
liver31 / 207743149
lung67 / 336974198
lymph7 / 44270158
lymph node34 / 91610371
mammary gland41 / 153271267
mouth30 / 67052447
muscle14 / 107715129
nerve2 / 15768126
ovary21 / 102051205
pancreas26 / 214812121
parathyroid9 / 20539438
pharynx6 / 41328145
pituitary gland3 / 16585180
placenta42 / 280825149
prostate33 / 189345174
salivary gland5 / 20155248
skin49 / 210574232
spleen5 / 5395292
stomach13 / 96619134
testis193 / 330442584
thymus22 / 81131271
thyroid14 / 47473294
tonsil1 / 1699958
trachea36 / 52413686
umbilical cord2 / 13680146
uterus62 / 232878266
vascular15 / 51780289
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 200722_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts492.7
Adipocyte94.85
AdrenalCortex39
Adrenalgland52.4
Amygdala50.1
Appendix28.45
AtrioventricularNode26.2
BDCA4+_DentriticCells337.05
Bonemarrow47.15
BronchialEpithelialCells194.7
CD105+_Endothelial135.65
CD14+_Monocytes59.3
CD19+_BCells(neg._sel.)51.15
CD33+_Myeloid117.15
CD34+192.1
CD4+_Tcells131.5
CD56+_NKCells171.9
CD71+_EarlyErythroid80.75
CD8+_Tcells92.95
CardiacMyocytes275.8
Caudatenucleus24.5
Cerebellum34.9
CerebellumPeduncles54.5
CiliaryGanglion15.45
CingulateCortex32.25
Colorectaladenocarcinoma104.5
DorsalRootGanglion20.7
FetalThyroid30.45
Fetalbrain79.85
Fetalliver54.8
Fetallung44
GlobusPallidus30.65
Heart21.4
Hypothalamus34.35
Kidney48.8
Leukemia_chronicMyelogenousK-56250.7
Leukemia_promyelocytic-HL-6066.5
Leukemialymphoblastic(MOLT-4)103.95
Liver20.75
Lung23.4
Lymphnode31.4
Lymphoma_burkitts(Daudi)66.7
Lymphoma_burkitts(Raji)71.25
MedullaOblongata48.6
OccipitalLobe69.75
OlfactoryBulb18.65
Ovary36.2
Pancreas28.1
PancreaticIslet79.5
ParietalLobe27.75
Pituitary123
Placenta97.95
Pons34.75
PrefrontalCortex34.8
Prostate47.55
Salivarygland38
SkeletalMuscle76.5
Skin14.3
SmoothMuscle172.55
Spinalcord45.85
SubthalamicNucleus31.65
SuperiorCervicalGanglion54.5
TemporalLobe33.65
Testis157.05
TestisGermCell311.75
TestisIntersitial345.45
TestisLeydigCell415.25
TestisSeminiferousTubule249.05
Thalamus18.35
Thymus61.8
Thyroid47.7
Tongue18.45
Tonsil72.9
Trachea77.9
TrigeminalGanglion81.95
Uterus41.4
UterusCorpus88.8
WholeBlood40.8
Wholebrain43.7
colon101.3
pineal_day89.88
pineal_night113.88
retina73.125
small_intestine57
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P235872
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.73 ± 0.3
Basal Forebrain7.61 ± 0.18
Basal Part of Pons7.76 ± 0.32
Cerebellar Cortex7.93 ± 0.37
Cerebellar Nuclei7.73 ± 0.17
Claustrum7.38 ± 0.33
Epithalamus8.27 ± 0.44
Frontal Lobe7.72 ± 0.29
Globus Pallidus7.88 ± 0.3
Hypothalamus7.56 ± 0.28
Insula7.87 ± 0.28
Limbic Lobe7.73 ± 0.29
Mesencephalon7.77 ± 0.25
Myelencephalon7.73 ± 0.31
Occipital Lobe7.92 ± 0.29
Parietal Lobe7.76 ± 0.29
Pontine Tegmentum7.77 ± 0.3
Striatum7.96 ± 0.4
Subthalamus7.73 ± 0.21
Temporal Lobe7.73 ± 0.23
Thalamus7.79 ± 0.29
White Matter7.85 ± 0.18
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Gpiap1CBCerebellum21.43
45.43
Gpiap1CTXCerebral cortex35.8
29.02
Gpiap1HIPHippocampal region34.88
41.39
Gpiap1HPFHippocampal formation37.99
39.67
Gpiap1HYHypothalamus25.09
20.46
Gpiap1LSXLateral septal complex17.21
13.48
Gpiap1MBMidbrain22.65
22.45
Gpiap1MYMedulla29.99
39.78
Gpiap1OLFOlfactory bulb33.09
26.97
Gpiap1PPons28.81
34.17
Gpiap1PALPallidum22.5
21.75
Gpiap1RHPRetrohippocampal region42.99
37.5
Gpiap1sAMYStriatum-like amygdalar nuclei20.44
16.21
Gpiap1STRStriatum22.73
18.17
Gpiap1STRdStriatum dorsal region25.79
20.89
Gpiap1STRvStriatum ventral region17.87
13.49
Gpiap1THThalamus37.41
33.6
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CAPR1_HUMAN_1 13 1 13 MKQILGVIDKKLR PRIDE
CAPR1_HUMAN_245 13 245 257 QFMAETQFTSGEK PRIDE
CAPR1_HUMAN_3 11 3 13 QILGVIDKKLR PRIDE
CAPR1_HUMAN_62 11 62 72 SFMALSQDIQK PRIDE
PAp00002110 10 222 231 EKPVCGTTYK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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