AutismKB 2.0

Annotation Detail for MAGEA4


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Basic Information Top
Gene Symbol:MAGEA4 ( CT1.4,MAGE-41,MAGE-X2,MAGE4,MAGE4A,MAGE4B,MGC21336 )
Gene Full Name: melanoma antigen family A, 4
Band: Xq28
Quick LinksEntrez ID:4103; OMIM: 300175; Uniprot ID:MAGA4_HUMAN; ENSEMBL ID: ENSG00000147381; HGNC ID: 6802
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult22 / 193912111
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor28 / 119369234
germ cell tumor0 / 2638450 
glioma1 / 1068839
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor8 / 9635983
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal21 / 33603076
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor8 / 9025788
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain3 / 11009892
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine24 / 234472102
kidney0 / 2117770 
larynx0 / 241450 
liver8 / 20774338
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth1 / 6705214
muscle1 / 1077159
nerve0 / 157680 
ovary1 / 1020519
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta9 / 28082532
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach4 / 9661941
testis9 / 33044227
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus8 / 23287834
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 214254_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.15
Adipocyte7.4
AdrenalCortex10.3
Adrenalgland6.6
Amygdala7.65
Appendix9.95
AtrioventricularNode8.35
BDCA4+_DentriticCells7.9
Bonemarrow8.6
BronchialEpithelialCells7.5
CD105+_Endothelial7.85
CD14+_Monocytes8.45
CD19+_BCells(neg._sel.)8.35
CD33+_Myeloid10
CD34+9.15
CD4+_Tcells8
CD56+_NKCells9.35
CD71+_EarlyErythroid7.25
CD8+_Tcells7.05
CardiacMyocytes14.8
Caudatenucleus6.95
Cerebellum6.25
CerebellumPeduncles9.55
CiliaryGanglion7.35
CingulateCortex8.15
Colorectaladenocarcinoma7.55
DorsalRootGanglion8.3
FetalThyroid7.8
Fetalbrain7.7
Fetalliver6.6
Fetallung5.95
GlobusPallidus7.2
Heart13.65
Hypothalamus7.9
Kidney6.5
Leukemia_chronicMyelogenousK-5626.9
Leukemia_promyelocytic-HL-606.7
Leukemialymphoblastic(MOLT-4)5.95
Liver13.8
Lung8.4
Lymphnode6.4
Lymphoma_burkitts(Daudi)9.9
Lymphoma_burkitts(Raji)11.45
MedullaOblongata7.05
OccipitalLobe6.95
OlfactoryBulb6.05
Ovary5.9
Pancreas6.65
PancreaticIslet8.25
ParietalLobe8.75
Pituitary9.15
Placenta8.05
Pons7.9
PrefrontalCortex9.25
Prostate8.85
Salivarygland6.5
SkeletalMuscle12.5
Skin9.5
SmoothMuscle8.8
Spinalcord8.25
SubthalamicNucleus7.5
SuperiorCervicalGanglion12.8
TemporalLobe7.3
Testis6.75
TestisGermCell6.5
TestisIntersitial8.2
TestisLeydigCell8.2
TestisSeminiferousTubule9.25
Thalamus8.05
Thymus5.6
Thyroid9
Tongue9.65
Tonsil7.55
Trachea6.3
TrigeminalGanglion13.1
Uterus6.35
UterusCorpus7.95
WholeBlood8.4
Wholebrain5.85
colon7.75
pineal_day9.22
pineal_night9.04
retina9.35
small_intestine7.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_12043_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.02 ± 1.08
Basal Forebrain1.53 ± 0.21
Basal Part of Pons1.23 ± 0.43
Cerebellar Cortex1.43 ± 0.73
Cerebellar Nuclei2.01 ± 0.89
Claustrum2.67 ± 0.9
Epithalamus1.47 ± 0.65
Frontal Lobe1.51 ± 0.82
Globus Pallidus2.21 ± 0.31
Hypothalamus1.63 ± 0.73
Insula1.62 ± 0.79
Limbic Lobe1.69 ± 0.77
Mesencephalon1.73 ± 0.78
Myelencephalon1.68 ± 0.73
Occipital Lobe1.72 ± 0.84
Parietal Lobe1.64 ± 0.8
Pontine Tegmentum1.74 ± 0.82
Striatum1.8 ± 0.64
Subthalamus1.72 ± 0.67
Temporal Lobe1.54 ± 0.72
Thalamus1.56 ± 0.65
White Matter2.23 ± 0.59
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Magea9CBCerebellum2.27
3.26
Magea9CTXCerebral cortex0.2
0.38
Magea9HIPHippocampal region0.11
0.16
Magea9HPFHippocampal formation0.13
0.23
Magea9HYHypothalamus0.27
0.37
Magea9LSXLateral septal complex0.34
0.33
Magea9MBMidbrain0.16
0.34
Magea9MYMedulla0.67
0.88
Magea9OLFOlfactory bulb4.91
6.42
Magea9PPons0.33
0.65
Magea9PALPallidum0.09
0.13
Magea9RHPRetrohippocampal region0.18
0.35
Magea9sAMYStriatum-like amygdalar nuclei0.24
0.68
Magea9STRStriatum0.2
0.24
Magea9STRdStriatum dorsal region0.06
0.1
Magea9STRvStriatum ventral region0.57
0.42
Magea9THThalamus0.11
0.31
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00073568 15 246 260 LLTQDWVQENYLEYR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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