AutismKB 2.0

Annotation Detail for MGAT3


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Basic Information Top
Gene Symbol:MGAT3 ( FLJ43371,GNT-III,GNT3,MGC141943,MGC142278 )
Gene Full Name: mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
Band: 22q13.1
Quick LinksEntrez ID:4248; OMIM: 604621; Uniprot ID:MGAT3_HUMAN; ENSEMBL ID: ENSG00000128268; HGNC ID: 7046
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus9 / 56401215
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult23 / 193912111
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor5 / 26384518
glioma5 / 10688346
head and neck tumor0 / 1363020 
kidney tumor3 / 6895943
leukemia6 / 9584262
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia6 / 9725061
normal68 / 336030720
ovarian tumor3 / 7668239
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer1 / 1026809
retinoblastoma6 / 46356129
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone0 / 716550 
bone marrow0 / 488010 
brain41 / 110098937
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye14 / 21105466
heart1 / 8962611
intestine4 / 23447217
kidney8 / 21177737
larynx0 / 241450 
liver1 / 2077434
lung6 / 33697417
lymph0 / 442700 
lymph node12 / 91610130
mammary gland0 / 1532710 
mouth2 / 6705229
muscle0 / 1077150 
nerve1 / 1576863
ovary2 / 10205119
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis5 / 33044215
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209764_at
Cell line Expression level Expression bar
721_B_lymphoblasts38.55
Adipocyte20.55
AdrenalCortex21.95
Adrenalgland15.05
Amygdala35
Appendix23.7
AtrioventricularNode22.1
BDCA4+_DentriticCells12.65
Bonemarrow36.75
BronchialEpithelialCells12.95
CD105+_Endothelial130.7
CD14+_Monocytes15.35
CD19+_BCells(neg._sel.)16.7
CD33+_Myeloid14.8
CD34+41.75
CD4+_Tcells16.45
CD56+_NKCells13.3
CD71+_EarlyErythroid155.05
CD8+_Tcells12.35
CardiacMyocytes25.55
Caudatenucleus54.55
Cerebellum84.1
CerebellumPeduncles84.65
CiliaryGanglion21.95
CingulateCortex57.4
Colorectaladenocarcinoma18.05
DorsalRootGanglion16.55
FetalThyroid21.7
Fetalbrain60.7
Fetalliver26.9
Fetallung15.45
GlobusPallidus37.45
Heart24.15
Hypothalamus41.8
Kidney28.95
Leukemia_chronicMyelogenousK-56229.3
Leukemia_promyelocytic-HL-6032.8
Leukemialymphoblastic(MOLT-4)15.3
Liver24.5
Lung30.45
Lymphnode18.9
Lymphoma_burkitts(Daudi)32.55
Lymphoma_burkitts(Raji)36.7
MedullaOblongata31.35
OccipitalLobe45.35
OlfactoryBulb27.95
Ovary14.4
Pancreas18
PancreaticIslet19.25
ParietalLobe37.55
Pituitary21.25
Placenta21
Pons57.5
PrefrontalCortex38.25
Prostate18.35
Salivarygland18
SkeletalMuscle31.8
Skin21.65
SmoothMuscle21.85
Spinalcord28.7
SubthalamicNucleus46.65
SuperiorCervicalGanglion24.1
TemporalLobe52.6
Testis14.35
TestisGermCell10.6
TestisIntersitial12.9
TestisLeydigCell18.75
TestisSeminiferousTubule19.5
Thalamus85.55
Thymus14.3
Thyroid16.45
Tongue21.25
Tonsil23.15
Trachea21.65
TrigeminalGanglion24.8
Uterus14.5
UterusCorpus15.5
WholeBlood14
Wholebrain64.05
colon14.85
pineal_day40.88
pineal_night30.52
retina26.075
small_intestine15.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P91742
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.75 ± 0.61
Basal Forebrain3.4 ± 0.45
Basal Part of Pons3.93 ± 0.54
Cerebellar Cortex3.72 ± 0.46
Cerebellar Nuclei3.38 ± 0.54
Claustrum3.89 ± 0.95
Epithalamus2.92 ± 0.81
Frontal Lobe3.65 ± 0.58
Globus Pallidus3.68 ± 0.72
Hypothalamus3.32 ± 0.67
Insula3.7 ± 0.45
Limbic Lobe4 ± 0.53
Mesencephalon3.68 ± 0.56
Myelencephalon3.68 ± 0.6
Occipital Lobe3.97 ± 0.62
Parietal Lobe3.78 ± 0.69
Pontine Tegmentum3.74 ± 0.71
Striatum3.74 ± 0.68
Subthalamus3.91 ± 0.7
Temporal Lobe3.77 ± 0.53
Thalamus3.79 ± 0.55
White Matter3.22 ± 0.79
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Mgat3CBCerebellum48.07
63.55
Mgat3CTXCerebral cortex80.09
68.25
Mgat3HIPHippocampal region58.71
100
Mgat3HPFHippocampal formation65.54
91.09
Mgat3HYHypothalamus23.03
19.51
Mgat3LSXLateral septal complex39.19
29.03
Mgat3MBMidbrain38.8
38.42
Mgat3MYMedulla50.67
60.66
Mgat3OLFOlfactory bulb61.39
57.55
Mgat3PPons42.69
49.67
Mgat3PALPallidum32.36
34.42
Mgat3RHPRetrohippocampal region78.19
68.83
Mgat3sAMYStriatum-like amygdalar nuclei46.19
36.12
Mgat3STRStriatum37.56
28.37
Mgat3STRdStriatum dorsal region37.98
28.95
Mgat3STRvStriatum ventral region30.65
22.02
Mgat3THThalamus48.24
47.29
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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