AutismKB 2.0

Annotation Detail for CD99


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Basic Information Top
Gene Symbol:CD99 ( HBA71,MIC2,MIC2X,MIC2Y,MSK5X )
Gene Full Name: CD99 molecule
Band: Xp22.32 and Yp11.3
Quick LinksEntrez ID:4267; OMIM: 313470,450000; Uniprot ID:CD99_HUMAN; ENSEMBL ID: ENSG00000002586; HGNC ID: 7082
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body9 / 70761127
blastocyst6 / 6231996
fetus47 / 56401283
neonate12 / 31097385
infant0 / 236200 
juvenile13 / 55556233
adult286 / 1939121147
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor5 / 12794390
bladder carcinoma1 / 1747557
breast (mammary gland) tumor5 / 9417853
cervical tumor5 / 34366145
chondrosarcoma29 / 82823350
colorectal tumor9 / 11424678
esophageal tumor0 / 172900 
gastrointestinal tumor21 / 119369175
germ cell tumor9 / 26384534
glioma21 / 106883196
head and neck tumor8 / 13630258
kidney tumor5 / 6895972
leukemia16 / 95842166
liver tumor7 / 9635972
lung tumor14 / 103127135
lymphoma8 / 71755111
non-neoplasia6 / 9725061
normal403 / 3360307119
ovarian tumor2 / 7668226
pancreatic tumor24 / 104616229
primitive neuroectodermal tumor of the CNS6 / 12568047
prostate cancer16 / 102680155
retinoblastoma0 / 463560 
skin tumor24 / 124949192
soft tissue/muscle tissue tumor17 / 125191135
uterine tumor10 / 90257110
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue5 / 13106381
adrenal gland5 / 33197150
ascites5 / 40015124
bladder3 / 29757100
blood22 / 123478178
bone18 / 71655251
bone marrow9 / 48801184
brain96 / 110098987
cervix9 / 48171186
connective tissue19 / 149255127
ear2 / 16212123
embryonic tissue24 / 215722111
esophagus0 / 202090 
eye28 / 211054132
heart19 / 89626211
intestine29 / 234472123
kidney8 / 21177737
larynx0 / 241450 
liver25 / 207743120
lung43 / 336974127
lymph0 / 442700 
lymph node7 / 9161076
mammary gland10 / 15327165
mouth3 / 6705244
muscle4 / 10771537
nerve6 / 15768380
ovary6 / 10205158
pancreas97 / 214812451
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland2 / 16585120
placenta35 / 280825124
prostate34 / 189345179
salivary gland4 / 20155198
skin35 / 210574166
spleen4 / 5395274
stomach39 / 96619403
testis35 / 330442105
thymus21 / 81131258
thyroid1 / 4747321
tonsil6 / 16999352
trachea0 / 524130 
umbilical cord14 / 136801023
uterus21 / 23287890
vascular4 / 5178077
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201028_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts245.3
Adipocyte927
AdrenalCortex81.5
Adrenalgland125.2
Amygdala88.2
Appendix232.75
AtrioventricularNode57.75
BDCA4+_DentriticCells837.4
Bonemarrow93
BronchialEpithelialCells342.25
CD105+_Endothelial123
CD14+_Monocytes485.1
CD19+_BCells(neg._sel.)160.05
CD33+_Myeloid403.6
CD34+438
CD4+_Tcells534.15
CD56+_NKCells1319.15
CD71+_EarlyErythroid184.1
CD8+_Tcells589.15
CardiacMyocytes985.4
Caudatenucleus102.55
Cerebellum46.8
CerebellumPeduncles107.8
CiliaryGanglion74.65
CingulateCortex54.85
Colorectaladenocarcinoma128.6
DorsalRootGanglion121.65
FetalThyroid223.35
Fetalbrain22.6
Fetalliver123.8
Fetallung307.65
GlobusPallidus38.4
Heart429.45
Hypothalamus204.75
Kidney57.5
Leukemia_chronicMyelogenousK-56236.45
Leukemia_promyelocytic-HL-6058.35
Leukemialymphoblastic(MOLT-4)841.55
Liver546.7
Lung1250.85
Lymphnode220.15
Lymphoma_burkitts(Daudi)26.85
Lymphoma_burkitts(Raji)24.6
MedullaOblongata67
OccipitalLobe45.05
OlfactoryBulb473.6
Ovary199.5
Pancreas191.55
PancreaticIslet1774
ParietalLobe53.3
Pituitary166.05
Placenta455.45
Pons100.3
PrefrontalCortex48.6
Prostate974.1
Salivarygland33.25
SkeletalMuscle79.95
Skin94.7
SmoothMuscle1481.2
Spinalcord997.65
SubthalamicNucleus34.1
SuperiorCervicalGanglion53.9
TemporalLobe99.45
Testis407.8
TestisGermCell986.2
TestisIntersitial204.8
TestisLeydigCell329.95
TestisSeminiferousTubule311.35
Thalamus96.95
Thymus2217.15
Thyroid273.1
Tongue43.75
Tonsil142.2
Trachea212.1
TrigeminalGanglion116
Uterus733.1
UterusCorpus346.9
WholeBlood441.65
Wholebrain94.85
colon400.1
pineal_day144.32
pineal_night221.64
retina584.7
small_intestine285.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P217510
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala10.1 ± 0.25
Basal Forebrain10.49 ± 0.24
Basal Part of Pons9.79 ± 0.25
Cerebellar Cortex9.87 ± 0.19
Cerebellar Nuclei10.3 ± 0.55
Claustrum9.51 ± 0.3
Epithalamus11.6 ± 0.58
Frontal Lobe10.03 ± 0.46
Globus Pallidus11.8 ± 0.39
Hypothalamus10.73 ± 0.83
Insula10.12 ± 0.37
Limbic Lobe9.97 ± 0.45
Mesencephalon10.37 ± 0.46
Myelencephalon10.32 ± 0.49
Occipital Lobe9.85 ± 0.38
Parietal Lobe10.05 ± 0.52
Pontine Tegmentum10.05 ± 0.41
Striatum10.87 ± 0.52
Subthalamus10.02 ± 0.35
Temporal Lobe9.97 ± 0.39
Thalamus10.16 ± 0.31
White Matter10.42 ± 0.8
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CD99_HUMAN_152 18 152 169 LCFKENAEQGEVDMESHR PRIDE
CD99_HUMAN_156 14 156 169 ENAEQGEVDMESHR PRIDE
CD99_HUMAN_157 14 157 170 ENAEQGEVDMESHR PRIDE
CD99_HUMAN_170 10 170 179 NANAEPAVQR PRIDE
PAp00004746 18 137 154 LCFKENAEQGEVDMESHR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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