Annotation Detail for CCDC88C
Basic Information Top
| Gene Symbol: | CCDC88C ( DAPLE,FLJ00354,HkRP2,KIAA1509 ) |
|---|---|
| Gene Full Name: | coiled-coil domain containing 88C |
| Band: | 14q32.11-q32.12 |
| Quick Links | Entrez ID:440193; OMIM: 611204; Uniprot ID:DAPLE_HUMAN; ENSEMBL ID: ENSG00000015133; HGNC ID: 19967 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.525536
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 4 / 564012 | 7 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 93 / 1939121 | 47 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 8 / 119369 | 67 | |
| germ cell tumor | 14 / 263845 | 53 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 6 / 136302 | 44 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 8 / 103127 | 77 | |
| lymphoma | 22 / 71755 | 306 |  |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 63 / 3360307 | 18 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 4 / 40015 | 99 | |
| bladder | 0 / 29757 | 0 | |
| blood | 10 / 123478 | 80 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 4 / 1100989 | 3 | |
| cervix | 8 / 48171 | 166 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 1 / 89626 | 11 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 3 / 24145 | 124 | |
| liver | 0 / 207743 | 0 | |
| lung | 12 / 336974 | 35 | |
| lymph | 15 / 44270 | 338 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 9 / 153271 | 58 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 10 / 189345 | 52 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 4 / 96619 | 41 | |
| testis | 7 / 330442 | 21 | |
| thymus | 6 / 81131 | 73 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P379945
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.08 ± 0.56 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.99 ± 0.55 | |
| Basal Part of Pons | 4.04 ± 0.49 | |
| Cerebellar Cortex | 3.93 ± 0.29 | |
| Cerebellar Nuclei | 4.91 ± 0.54 | |
| Claustrum | 3.82 ± 0.66 | |
| Epithalamus | 6.95 ± 1.15 | |
| Frontal Lobe | 4.52 ± 0.7 | |
| Globus Pallidus | 5.42 ± 0.53 | |
| Hypothalamus | 5.27 ± 0.65 | |
| Insula | 4.72 ± 0.52 | |
| Limbic Lobe | 4.32 ± 0.79 | |
| Mesencephalon | 4.79 ± 0.88 | |
| Myelencephalon | 4.91 ± 0.96 | |
| Occipital Lobe | 4.95 ± 1.04 | |
| Parietal Lobe | 4.67 ± 0.69 | |
| Pontine Tegmentum | 5.04 ± 0.55 | |
| Striatum | 7.76 ± 1.05 | |
| Subthalamus | 4.84 ± 0.37 | |
| Temporal Lobe | 4.45 ± 0.65 | |
| Thalamus | 4.74 ± 0.62 | |
| White Matter | 5.07 ± 0.17 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 0610010D24Rik | CB | Cerebellum | 10.08 | |
| 12.23 | | |||
| 0610010D24Rik | CTX | Cerebral cortex | 19.22 | |
| 15.89 | | |||
| 0610010D24Rik | HIP | Hippocampal region | 23.03 | |
| 35.96 | | |||
| 0610010D24Rik | HPF | Hippocampal formation | 22.34 | |
| 28.36 | | |||
| 0610010D24Rik | HY | Hypothalamus | 1.95 | |
| 1.97 | | |||
| 0610010D24Rik | LSX | Lateral septal complex | 6.08 | |
| 5.01 | | |||
| 0610010D24Rik | MB | Midbrain | 4.13 | |
| 4.77 | | |||
| 0610010D24Rik | MY | Medulla | 6.35 | |
| 9.26 | | |||
| 0610010D24Rik | OLF | Olfactory bulb | 21.87 | |
| 18.2 | | |||
| 0610010D24Rik | P | Pons | 3.32 | |
| 4.51 | | |||
| 0610010D24Rik | PAL | Pallidum | 7.28 | |
| 6.41 | | |||
| 0610010D24Rik | RHP | Retrohippocampal region | 21.95 | |
| 19.84 | | |||
| 0610010D24Rik | sAMY | Striatum-like amygdalar nuclei | 11.48 | |
| 9.1 | | |||
| 0610010D24Rik | STR | Striatum | 52.39 | |
| 38 | | |||
| 0610010D24Rik | STRd | Striatum dorsal region | 71.33 | |
| 52.66 | | |||
| 0610010D24Rik | STRv | Striatum ventral region | 30.18 | |
| 19.97 | | |||
| 0610010D24Rik | TH | Thalamus | 3.31 | |
| 3.36 | |