AutismKB 2.0

Annotation Detail for MSR1


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:MSR1 ( CD204,SCARA1,SR-A,phSR1,phSR2 )
Gene Full Name: macrophage scavenger receptor 1
Band: 8p22
Quick LinksEntrez ID:4481; OMIM: 153622; Uniprot ID:MSRE_HUMAN; ENSEMBL ID: ENSG00000038945; HGNC ID: 7376
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus5 / 5640128
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult34 / 193912117
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor4 / 11424635
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor1 / 1363027
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia14 / 97250143
normal33 / 33603079
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites0 / 400150 
bladder1 / 2975733
blood5 / 12347840
bone0 / 716550 
bone marrow0 / 488010 
brain5 / 11009894
cervix0 / 481710 
connective tissue13 / 14925587
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart1 / 8962611
intestine5 / 23447221
kidney6 / 21177728
larynx1 / 2414541
liver1 / 2077434
lung14 / 33697441
lymph0 / 442700 
lymph node0 / 916100 
mammary gland4 / 15327126
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta6 / 28082521
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen2 / 5395237
stomach0 / 966190 
testis1 / 3304423
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus1 / 2328784
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 208423_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.55
Adipocyte7
AdrenalCortex10.4
Adrenalgland6.3
Amygdala7.2
Appendix8.8
AtrioventricularNode8.05
BDCA4+_DentriticCells6.7
Bonemarrow8.35
BronchialEpithelialCells6.85
CD105+_Endothelial6.85
CD14+_Monocytes7.3
CD19+_BCells(neg._sel.)7.4
CD33+_Myeloid8.9
CD34+8.4
CD4+_Tcells7.15
CD56+_NKCells8.1
CD71+_EarlyErythroid6.85
CD8+_Tcells6.05
CardiacMyocytes17.65
Caudatenucleus6.35
Cerebellum5.75
CerebellumPeduncles8.55
CiliaryGanglion6.65
CingulateCortex7.4
Colorectaladenocarcinoma7.05
DorsalRootGanglion6.6
FetalThyroid7.2
Fetalbrain6.9
Fetalliver6.3
Fetallung5.15
GlobusPallidus5.55
Heart10.85
Hypothalamus7.1
Kidney6.25
Leukemia_chronicMyelogenousK-5626.45
Leukemia_promyelocytic-HL-606.25
Leukemialymphoblastic(MOLT-4)5.55
Liver10.45
Lung7.65
Lymphnode6
Lymphoma_burkitts(Daudi)9.5
Lymphoma_burkitts(Raji)11.25
MedullaOblongata6.35
OccipitalLobe6.25
OlfactoryBulb5.55
Ovary7.45
Pancreas5.9
PancreaticIslet7.45
ParietalLobe8.2
Pituitary8.4
Placenta7.05
Pons7.05
PrefrontalCortex8.15
Prostate8.05
Salivarygland5.9
SkeletalMuscle9.55
Skin6.9
SmoothMuscle8.2
Spinalcord7.55
SubthalamicNucleus6.85
SuperiorCervicalGanglion12.25
TemporalLobe6.7
Testis5.85
TestisGermCell5.75
TestisIntersitial6.1
TestisLeydigCell8.85
TestisSeminiferousTubule6.1
Thalamus7.3
Thymus5.15
Thyroid8.8
Tongue8.4
Tonsil7.05
Trachea5.8
TrigeminalGanglion10.5
Uterus5.65
UterusCorpus6.85
WholeBlood7.6
Wholebrain5.55
colon7.2
pineal_day8.28
pineal_night8.12
retina8.15
small_intestine6.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P392942
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2 ± 1
Basal Forebrain1.51 ± 0.19
Basal Part of Pons1.6 ± 1.04
Cerebellar Cortex1.45 ± 0.68
Cerebellar Nuclei2.01 ± 0.6
Claustrum2.28 ± 0.7
Epithalamus1.94 ± 0.67
Frontal Lobe1.41 ± 0.6
Globus Pallidus2.28 ± 0.37
Hypothalamus1.62 ± 0.84
Insula1.46 ± 0.48
Limbic Lobe1.55 ± 0.61
Mesencephalon1.67 ± 0.65
Myelencephalon1.61 ± 0.57
Occipital Lobe1.57 ± 0.54
Parietal Lobe1.58 ± 0.66
Pontine Tegmentum1.57 ± 0.62
Striatum1.83 ± 0.53
Subthalamus1.66 ± 0.55
Temporal Lobe1.51 ± 0.64
Thalamus1.54 ± 0.58
White Matter2.16 ± 0.36
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved