AutismKB 2.0

Annotation Detail for MT1A


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Basic Information Top
Gene Symbol:MT1A ( MGC32848,MT1,MT1S,MTC )
Gene Full Name: metallothionein 1A
Band: 16q13
Quick LinksEntrez ID:4489; OMIM: 156350; Uniprot ID:MT1A_HUMAN; ENSEMBL ID: ENSG00000205362; HGNC ID: 7393
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus2 / 5640123
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult46 / 193912123
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor42 / 114246367
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal8 / 33603072
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye3 / 21105414
heart0 / 896260 
intestine42 / 234472179
kidney0 / 2117770 
larynx0 / 241450 
liver2 / 2077439
lung3 / 3369748
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: Primary tumors (U95A)
  • Affymatrix Probe ID: 41446_f_at
Cell line Expression level Expression bar
Pr1T4923.019
Pr4T645.579
Pr5T3227.689
Pr7T3316.044
Pr1N2286.342
Pr5N1071.415
Pr6T1292.897
Pr3N3565.574
Pr3T1706.275
Pr4N2371.195
Pr2N1371.021
Pr8N966.13
Pr8T1909.516
Pr9N569.269
Pr10N5130.144
Pr10T4713.31
Pr9T3547.874
Pr11T507.901
Pr12T6385.385
Pr13AT4051.688
Pr13BT4226.791
Pr21T6731.56
Pr22T1322.577
Pr30T4687.56
Pr23T1400.7
Pr19T1554.507
Pr26T504.007
Pr31T436.689
Pr16T958.617
Pr17T7852.993
Pr24T5931.553
Pr27T390.624
Pr29T1135.883
OVR102236.301
HUOVR744.448
G2987.447
G3560.674
G5355.324
G61692.185
G8953.258
G9195.633
CO7T282.85
CO8T1029.312
CO15T1507.97
CO27T488.257
CO30T927.008
CO32T2406.116
CO40T449.981
CO52N8555.618
CO62N1055.772
K1488.922
K22915.459
K32287.31
K41103.895
K14N13221.066
K161019.357
K17343.701
K192364.751
K202726.808
K226406.549
CO9T1666.947
CO20T467.811
CO24T1436.495
CO36N1644.44
K182177.306
P1N9410.489
P2N8581.768
P5N4199.311
P86263.054
P112845.495
P1710044.567
K211752.923
K25N885.245
K28N16828.362
CO42T381.314
P222048.607
P13N1600.792
LU11T3076.022
LU16T862.947
LU7T686.856
LU8T1797.732
LU12T1266.053
LU13T392.272
LU5T17696.377
LU6T786.781
LU14T871.216
LU17T2248.884
LU50N1938.477
LU52N1133.438
LU18T667.331
LU55N877.351
LU3N1974.811
P16B2453.104
P231739.65
OVR161016.087
OVR192140.511
OVR274137.879
OVR281239.754
OVR278E305.837
OVR26515.209
OVR51007.513
OVR8337.366
OVR112887.21
OVR12842.533
OVR132467.532
OVR225483.819
OVR26570.163
OVR10301.388
OVR278S329.082
OVR1606.333
LU19T1007.646
LU20T600.547
LU24T1507.677
LU25T699.209
LU31T567.889
LU34T748.844
LU39T504.565
CO14T801.393
CO21T110.755
CO23T124.816
CO41N4219.472
LU40T387.658
LU41T1160.664
LU44T7786.916
LU46T1824.5
LU49T4074.054
L5N5678.338
LU42T351.648
LU30T2062.707
LU43T106.01
CO5T1991.027
CO44T1568.861
CO49T268.629
CO51T326.76
CO56T1038.963
CO61T562.193
LU26T367.257
LU33T1379.304
LU36T506.797
CO43T67.338
G182344.797
G463430.47
L11T297.596
L13N22310.671
L30T465.398
L31T509.327
L32T2822.263
L34T2139.156
L35T519.586
B1N1431.914
B5N3454.751
B8T6399.417
B10T4456.735
B14T1185.586
B16T1046.768
B17T1096.681
B1NR1509.996
B20T478.147
B51NR2679.066
B6T19905.985
B15T179.883
B21T11834.411
B29T946.055
B31T366.532
B32T3772.486
B24T496.857
B46T571.295
B34T1099.25
B36T1214.769
B37T575.076
B38T2179.687
B39T5669.572
X1023077.11
X116_021063.71
G2801216.986
X461059.222
X581305.764
G1862473.981
G296891.891
L38T1810.524
L31T.22658.747
L26N1632.068
N257ANTR774.473
N285BODY675.152
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_11240_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.71 ± 0.68
Basal Forebrain2.38 ± 0.28
Basal Part of Pons2.19 ± 0.73
Cerebellar Cortex1.89 ± 0.38
Cerebellar Nuclei2.39 ± 0.67
Claustrum2.31 ± 0.69
Epithalamus2.84 ± 0.6
Frontal Lobe2.49 ± 0.69
Globus Pallidus3.84 ± 0.49
Hypothalamus2.52 ± 0.59
Insula2.71 ± 0.6
Limbic Lobe2.4 ± 0.76
Mesencephalon2.77 ± 0.65
Myelencephalon2.57 ± 0.65
Occipital Lobe2.54 ± 0.58
Parietal Lobe2.62 ± 0.7
Pontine Tegmentum2.69 ± 0.61
Striatum3.2 ± 0.43
Subthalamus2.75 ± 0.17
Temporal Lobe2.43 ± 0.66
Thalamus2.72 ± 0.63
White Matter1.72 ± 0.61
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Mt1CBCerebellum100
100
Mt1CTXCerebral cortex100
100
Mt1HIPHippocampal region100
100
Mt1HPFHippocampal formation100
100
Mt1HYHypothalamus100
100
Mt1LSXLateral septal complex100
100
Mt1MBMidbrain100
100
Mt1MYMedulla100
100
Mt1OLFOlfactory bulb100
100
Mt1PPons100
100
Mt1PALPallidum100
100
Mt1RHPRetrohippocampal region100
100
Mt1sAMYStriatum-like amygdalar nuclei100
100
Mt1STRStriatum100
100
Mt1STRdStriatum dorsal region100
100
Mt1STRvStriatum ventral region100
100
Mt1THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00009409 8 44 51 CAQGCICK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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