AutismKB 2.0

Annotation Detail for MYO1F


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:MYO1F ( - )
Gene Full Name: myosin IF
Band: 19p13.2
Quick LinksEntrez ID:4542; OMIM: 601480; Uniprot ID:MYO1F_HUMAN; ENSEMBL ID: ENSG00000142347; HGNC ID: 7600
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult72 / 193912137
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor8 / 26384530
glioma3 / 10688328
head and neck tumor2 / 13630214
kidney tumor5 / 6895972
leukemia25 / 95842260
liver tumor0 / 963590 
lung tumor2 / 10312719
lymphoma1 / 7175513
non-neoplasia2 / 9725020
normal67 / 336030719
ovarian tumor1 / 7668213
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood35 / 123478283
bone1 / 7165513
bone marrow4 / 4880181
brain11 / 11009899
cervix0 / 481710 
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye2 / 2110549
heart0 / 896260 
intestine3 / 23447212
kidney6 / 21177728
larynx0 / 241450 
liver0 / 2077430 
lung6 / 33697417
lymph1 / 4427022
lymph node1 / 9161010
mammary gland1 / 1532716
mouth1 / 6705214
muscle0 / 1077150 
nerve0 / 157680 
ovary1 / 1020519
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta5 / 28082517
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen17 / 53952315
stomach0 / 966190 
testis3 / 3304429
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213733_at
Cell line Expression level Expression bar
721_B_lymphoblasts15.35
Adipocyte23.25
AdrenalCortex25.85
Adrenalgland21.1
Amygdala34
Appendix23.4
AtrioventricularNode18.55
BDCA4+_DentriticCells568.95
Bonemarrow418.7
BronchialEpithelialCells19.55
CD105+_Endothelial25.3
CD14+_Monocytes1377.65
CD19+_BCells(neg._sel.)100.75
CD33+_Myeloid1421.15
CD34+111.4
CD4+_Tcells468.9
CD56+_NKCells1530.15
CD71+_EarlyErythroid23.85
CD8+_Tcells621.45
CardiacMyocytes31
Caudatenucleus21.55
Cerebellum20.1
CerebellumPeduncles26.9
CiliaryGanglion14
CingulateCortex24.4
Colorectaladenocarcinoma24.7
DorsalRootGanglion19.25
FetalThyroid21.95
Fetalbrain24.2
Fetalliver30.35
Fetallung36.95
GlobusPallidus7.2
Heart182.45
Hypothalamus26.65
Kidney19.8
Leukemia_chronicMyelogenousK-56226.6
Leukemia_promyelocytic-HL-6015.8
Leukemialymphoblastic(MOLT-4)18.95
Liver80.3
Lung252.9
Lymphnode113.8
Lymphoma_burkitts(Daudi)31.55
Lymphoma_burkitts(Raji)34.15
MedullaOblongata22.6
OccipitalLobe21.65
OlfactoryBulb23.45
Ovary18.05
Pancreas22.7
PancreaticIslet26.2
ParietalLobe25.5
Pituitary28.85
Placenta33.2
Pons23.65
PrefrontalCortex29.5
Prostate31.35
Salivarygland20.2
SkeletalMuscle29.2
Skin20.1
SmoothMuscle27.75
Spinalcord28.35
SubthalamicNucleus17.35
SuperiorCervicalGanglion29.35
TemporalLobe21.45
Testis30.65
TestisGermCell14.8
TestisIntersitial20.55
TestisLeydigCell24
TestisSeminiferousTubule29.35
Thalamus22.5
Thymus31.05
Thyroid30.6
Tongue24.4
Tonsil46.75
Trachea24.75
TrigeminalGanglion27.9
Uterus21
UterusCorpus26.3
WholeBlood2881.85
Wholebrain18.4
colon44
pineal_day15.44
pineal_night17.4
retina33.225
small_intestine43.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P323610
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.33 ± 0.7
Basal Forebrain4.91 ± 0.61
Basal Part of Pons5.16 ± 0.29
Cerebellar Cortex4.97 ± 0.41
Cerebellar Nuclei5.4 ± 0.35
Claustrum5.42 ± 0.55
Epithalamus5.27 ± 0.3
Frontal Lobe4.74 ± 0.48
Globus Pallidus5.88 ± 0.34
Hypothalamus4.68 ± 0.81
Insula4.8 ± 0.69
Limbic Lobe4.95 ± 0.52
Mesencephalon4.85 ± 0.6
Myelencephalon4.98 ± 0.51
Occipital Lobe5.05 ± 0.45
Parietal Lobe4.84 ± 0.62
Pontine Tegmentum4.84 ± 0.61
Striatum5.01 ± 0.49
Subthalamus4.89 ± 0.76
Temporal Lobe4.98 ± 0.5
Thalamus4.91 ± 0.43
White Matter6.12 ± 0.56
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Myo1fCBCerebellum1.65
2.62
Myo1fCTXCerebral cortex0.63
0.93
Myo1fHIPHippocampal region0.35
0.61
Myo1fHPFHippocampal formation0.43
0.79
Myo1fHYHypothalamus0.73
1.42
Myo1fLSXLateral septal complex0.51
0.52
Myo1fMBMidbrain0.53
0.84
Myo1fMYMedulla1.21
1.35
Myo1fOLFOlfactory bulb1.95
2.1
Myo1fPPons1.05
2.3
Myo1fPALPallidum0.38
0.35
Myo1fRHPRetrohippocampal region0.56
1.06
Myo1fsAMYStriatum-like amygdalar nuclei0.75
1.25
Myo1fSTRStriatum0.42
0.53
Myo1fSTRdStriatum dorsal region0.35
0.44
Myo1fSTRvStriatum ventral region0.57
0.67
Myo1fTHThalamus0.4
0.48
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
MYO1F_HUMAN_0 0 0 0 AEQEEYVQEGIR PRIDE
MYO1F_HUMAN_0 0 0 0 DIILQSNPLLEAFGNAK PRIDE
MYO1F_HUMAN_0 0 0 0 GPPSTSLGASR PRIDE
MYO1F_HUMAN_0 0 0 0 LFDFLVEAINR PRIDE
MYO1F_HUMAN_0 0 0 0 NPESLFLLEEVR PRIDE
MYO1F_HUMAN_0 0 0 0 RPLPLTFSDTLQFR PRIDE
MYO1F_HUMAN_0 0 0 0 TLTVSVGDGLPK PRIDE
MYO1F_HUMAN_0 0 0 0 VESVDLLAFPAYLLGIDSGR PRIDE
MYO1F_HUMAN_0 0 0 0 VFVKNPESLFLLEEVR PRIDE
MYO1F_HUMAN_0 0 0 0 VSYDVSGFCER PRIDE
MYO1F_HUMAN_0 0 0 0 VVCDLIENK PRIDE
MYO1F_HUMAN_0 0 0 0 YAILTPETWPR PRIDE
MYO1F_HUMAN_141 17 141 157 DIILQSNPLLEAFGNAK PRIDE
MYO1F_HUMAN_296 20 296 315 VESVDLLAFPAYLLGIDSGR PRIDE
MYO1F_HUMAN_296 24 296 319 VESVDLLAFPAYLLGIDSGRLQEK PRIDE
MYO1F_HUMAN_360 11 360 370 LFDFLVEAINR PRIDE
MYO1F_HUMAN_420 12 420 431 AEQEEYVQEGIR PRIDE
MYO1F_HUMAN_633 11 633 643 YAILTPETWPR PRIDE
MYO1F_HUMAN_737 16 737 752 NFVGDYLGLEERPELR PRIDE
PAp00408728 17 142 158 DIILQSNPLLEAFGNAK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved