AutismKB 2.0

Annotation Detail for MYO1D


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Basic Information Top
Gene Symbol:MYO1D ( KIAA0727,myr4 )
Gene Full Name: myosin ID
Band: 17q11.2
Quick LinksEntrez ID:4642; OMIM: 606539; Uniprot ID:MYO1D_HUMAN; ENSEMBL ID: ENSG00000176658; HGNC ID: 7598
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body7 / 7076198
blastocyst0 / 623190 
fetus14 / 56401224
neonate3 / 3109796
infant0 / 236200 
juvenile1 / 5555617
adult139 / 193912171
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor7 / 9417874
cervical tumor0 / 343660 
chondrosarcoma19 / 82823229
colorectal tumor32 / 114246280
esophageal tumor0 / 172900 
gastrointestinal tumor8 / 11936967
germ cell tumor7 / 26384526
glioma0 / 1068830 
head and neck tumor16 / 136302117
kidney tumor5 / 6895972
leukemia4 / 9584241
liver tumor13 / 96359134
lung tumor1 / 1031279
lymphoma2 / 7175527
non-neoplasia5 / 9725051
normal147 / 336030743
ovarian tumor3 / 7668239
pancreatic tumor35 / 104616334
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer3 / 10268029
retinoblastoma1 / 4635621
skin tumor26 / 124949208
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor7 / 9025777
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites4 / 4001599
bladder1 / 2975733
blood0 / 1234780 
bone15 / 71655209
bone marrow1 / 4880120
brain38 / 110098934
cervix0 / 481710 
connective tissue15 / 149255100
ear0 / 162120 
embryonic tissue8 / 21572237
esophagus0 / 202090 
eye13 / 21105461
heart2 / 8962622
intestine44 / 234472187
kidney11 / 21177751
larynx4 / 24145165
liver13 / 20774362
lung17 / 33697450
lymph2 / 4427045
lymph node4 / 9161043
mammary gland9 / 15327158
mouth10 / 67052149
muscle4 / 10771537
nerve1 / 1576863
ovary4 / 10205139
pancreas38 / 214812176
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta8 / 28082528
prostate5 / 18934526
salivary gland0 / 201550 
skin33 / 210574156
spleen1 / 5395218
stomach4 / 9661941
testis22 / 33044266
thymus1 / 8113112
thyroid4 / 4747384
tonsil0 / 169990 
trachea5 / 5241395
umbilical cord2 / 13680146
uterus14 / 23287860
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212338_at
Cell line Expression level Expression bar
721_B_lymphoblasts13.3
Adipocyte529.55
AdrenalCortex16.4
Adrenalgland16.55
Amygdala13.15
Appendix15.35
AtrioventricularNode14.5
BDCA4+_DentriticCells12.85
Bonemarrow13.75
BronchialEpithelialCells29.25
CD105+_Endothelial15.8
CD14+_Monocytes13.7
CD19+_BCells(neg._sel.)13.55
CD33+_Myeloid15.4
CD34+14.85
CD4+_Tcells13.25
CD56+_NKCells14.5
CD71+_EarlyErythroid13.5
CD8+_Tcells10.35
CardiacMyocytes21.1
Caudatenucleus12.05
Cerebellum10.65
CerebellumPeduncles15.75
CiliaryGanglion13
CingulateCortex14.8
Colorectaladenocarcinoma1002.95
DorsalRootGanglion12.15
FetalThyroid14.9
Fetalbrain11.05
Fetalliver12.15
Fetallung11.35
GlobusPallidus12.15
Heart20.15
Hypothalamus15.4
Kidney11.9
Leukemia_chronicMyelogenousK-56239.45
Leukemia_promyelocytic-HL-6010.45
Leukemialymphoblastic(MOLT-4)9.15
Liver18.8
Lung61.2
Lymphnode10.1
Lymphoma_burkitts(Daudi)16.85
Lymphoma_burkitts(Raji)19.7
MedullaOblongata12.05
OccipitalLobe11.75
OlfactoryBulb11.85
Ovary10
Pancreas13.7
PancreaticIslet40.4
ParietalLobe15.95
Pituitary15.15
Placenta13.05
Pons13.1
PrefrontalCortex15.5
Prostate16.6
Salivarygland11.3
SkeletalMuscle19.8
Skin13.4
SmoothMuscle14.5
Spinalcord29.5
SubthalamicNucleus12.6
SuperiorCervicalGanglion20.1
TemporalLobe12.05
Testis10.95
TestisGermCell10.4
TestisIntersitial11.3
TestisLeydigCell14.05
TestisSeminiferousTubule11.35
Thalamus19.2
Thymus9.3
Thyroid200.9
Tongue15.35
Tonsil13.6
Trachea31.3
TrigeminalGanglion17.25
Uterus10.25
UterusCorpus12.6
WholeBlood13.25
Wholebrain10.6
colon237.65
pineal_day15.86
pineal_night15.06
retina68.15
small_intestine133.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P119609
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.26 ± 0.98
Basal Forebrain5.39 ± 0.29
Basal Part of Pons5.22 ± 0.45
Cerebellar Cortex5.47 ± 0.29
Cerebellar Nuclei6.09 ± 0.73
Claustrum5.87 ± 0.46
Epithalamus5.09 ± 0.68
Frontal Lobe5.31 ± 0.67
Globus Pallidus6.5 ± 0.38
Hypothalamus5.1 ± 0.58
Insula4.91 ± 0.46
Limbic Lobe5.1 ± 0.58
Mesencephalon5.46 ± 0.79
Myelencephalon5.35 ± 0.75
Occipital Lobe5.56 ± 0.55
Parietal Lobe5.22 ± 0.69
Pontine Tegmentum5.54 ± 0.54
Striatum5.32 ± 0.76
Subthalamus6.3 ± 0.42
Temporal Lobe5.14 ± 0.61
Thalamus5.49 ± 0.55
White Matter7.9 ± 0.2
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Myo1dCBCerebellum9.73
9.42
Myo1dCTXCerebral cortex8.9
6.01
Myo1dHIPHippocampal region8.75
7.96
Myo1dHPFHippocampal formation7.11
5.94
Myo1dHYHypothalamus4.92
3.57
Myo1dLSXLateral septal complex2.52
2.06
Myo1dMBMidbrain10.64
8.84
Myo1dMYMedulla16.61
14.31
Myo1dOLFOlfactory bulb11.58
8.28
Myo1dPPons12.61
11.06
Myo1dPALPallidum7.79
6.78
Myo1dRHPRetrohippocampal region4.78
3.26
Myo1dsAMYStriatum-like amygdalar nuclei3.69
2.75
Myo1dSTRStriatum10.28
7.54
Myo1dSTRdStriatum dorsal region13.68
10.31
Myo1dSTRvStriatum ventral region3.59
2.14
Myo1dTHThalamus12.8
10.22
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
MYO1D_HUMAN_296 12 296 307 VVSIIAELLSTK PRIDE
PAp00000807 28 822 849 AWEGNYLASKPDTPQTSGTFVPVANELK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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