Annotation Detail for MYO5B
Basic Information Top
| Gene Symbol: | MYO5B ( KIAA1119 ) |
|---|---|
| Gene Full Name: | myosin VB |
| Band: | 18q |
| Quick Links | Entrez ID:4645; OMIM: 606540; Uniprot ID:MYO5B_HUMAN; ENSEMBL ID: ENSG00000167306; HGNC ID: 7603 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.720076
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 14 / 564012 | 24 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 79 / 1939121 | 40 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 7 / 94178 | 74 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 11 / 114246 | 96 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 8 / 119369 | 67 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 6 / 103127 | 58 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 96 / 3360307 | 28 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 6 / 40015 | 149 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 9 / 1100989 | 8 |  |
| cervix | 5 / 48171 | 103 | |
| connective tissue | 7 / 149255 | 46 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 11 / 211054 | 52 | |
| heart | 1 / 89626 | 11 | |
| intestine | 19 / 234472 | 81 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 10 / 336974 | 29 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 20 / 153271 | 130 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 10 / 280825 | 35 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 9 / 330442 | 27 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 5 / 47473 | 105 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P101193
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.71 ± 0.6 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.37 ± 0.5 | |
| Basal Part of Pons | 5.27 ± 0.45 | |
| Cerebellar Cortex | 3.83 ± 0.65 | |
| Cerebellar Nuclei | 4.17 ± 0.64 | |
| Claustrum | 4.6 ± 0.85 | |
| Epithalamus | 5.67 ± 1.85 | |
| Frontal Lobe | 5.33 ± 0.66 | |
| Globus Pallidus | 3.36 ± 1.84 | |
| Hypothalamus | 3.95 ± 0.45 | |
| Insula | 5.25 ± 0.43 | |
| Limbic Lobe | 4.91 ± 1.09 | |
| Mesencephalon | 4.62 ± 1.31 | |
| Myelencephalon | 4.68 ± 0.95 | |
| Occipital Lobe | 3.6 ± 1.13 | |
| Parietal Lobe | 5.23 ± 0.72 | |
| Pontine Tegmentum | 4.41 ± 0.88 | |
| Striatum | 3.63 ± 1.59 | |
| Subthalamus | 5.68 ± 0.87 | |
| Temporal Lobe | 5.09 ± 0.51 | |
| Thalamus | 4.84 ± 1.05 | |
| White Matter | 3.62 ± 0.6 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Myo5b | CB | Cerebellum | 27.64 | |
| 49.1 | | |||
| Myo5b | CTX | Cerebral cortex | 29.59 | |
| 24.17 | | |||
| Myo5b | HIP | Hippocampal region | 67.38 | |
| 81.99 | | |||
| Myo5b | HPF | Hippocampal formation | 54.3 | |
| 70.95 | | |||
| Myo5b | HY | Hypothalamus | 26.85 | |
| 24.54 | | |||
| Myo5b | LSX | Lateral septal complex | 88.1 | |
| 90.12 | | |||
| Myo5b | MB | Midbrain | 14.14 | |
| 13.87 | | |||
| Myo5b | MY | Medulla | 27.15 | |
| 34.22 | | |||
| Myo5b | OLF | Olfactory bulb | 52.26 | |
| 53.08 | | |||
| Myo5b | P | Pons | 17.02 | |
| 18.43 | | |||
| Myo5b | PAL | Pallidum | 18.17 | |
| 17.53 | | |||
| Myo5b | RHP | Retrohippocampal region | 37.6 | |
| 38.19 | | |||
| Myo5b | sAMY | Striatum-like amygdalar nuclei | 49.24 | |
| 44.3 | | |||
| Myo5b | STR | Striatum | 36.76 | |
| 30.85 | | |||
| Myo5b | STRd | Striatum dorsal region | 24.01 | |
| 18.42 | | |||
| Myo5b | STRv | Striatum ventral region | 36.38 | |
| 26.84 | | |||
| Myo5b | TH | Thalamus | 14.86 | |
| 14.65 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| MYO5B_HUMAN_1476 | 8 | 1476 | 1483 | EDEALLIR | PRIDE |
| PAp00848296 | 15 | 504 | 518 | LGILDLLDEECKVPK | Peptide Atlas |