AutismKB 2.0

Annotation Detail for MYO9A


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:MYO9A ( FLJ11061,FLJ13244,MGC71859 )
Gene Full Name: myosin IXA
Band: 15q23
Quick LinksEntrez ID:4649; OMIM: 604875; Uniprot ID:MYO9A_HUMAN; ENSEMBL ID: ENSG00000066933; HGNC ID: 7608
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst4 / 6231964
fetus34 / 56401260
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult62 / 193912131
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor6 / 9417863
cervical tumor1 / 3436629
chondrosarcoma0 / 828230 
colorectal tumor7 / 11424661
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor9 / 26384534
glioma0 / 1068830 
head and neck tumor1 / 1363027
kidney tumor2 / 6895929
leukemia1 / 9584210
liver tumor6 / 9635962
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal122 / 336030736
ovarian tumor4 / 7668252
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor6 / 12519147
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites1 / 4001524
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain23 / 110098920
cervix5 / 48171103
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue8 / 21572237
esophagus0 / 202090 
eye6 / 21105428
heart2 / 8962622
intestine10 / 23447242
kidney6 / 21177728
larynx0 / 241450 
liver8 / 20774338
lung2 / 3369745
lymph0 / 442700 
lymph node7 / 9161076
mammary gland11 / 15327171
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary4 / 10205139
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland1 / 1658560
placenta23 / 28082581
prostate2 / 18934510
salivary gland0 / 201550 
skin2 / 2105749
spleen3 / 5395255
stomach2 / 9661920
testis22 / 33044266
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus6 / 23287825
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219027_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts65.75
Adipocyte32.45
AdrenalCortex42.25
Adrenalgland32.85
Amygdala38.95
Appendix37.85
AtrioventricularNode41.65
BDCA4+_DentriticCells55.8
Bonemarrow38.9
BronchialEpithelialCells29.5
CD105+_Endothelial39.4
CD14+_Monocytes40
CD19+_BCells(neg._sel.)34.3
CD33+_Myeloid42.5
CD34+42.45
CD4+_Tcells76.35
CD56+_NKCells48.45
CD71+_EarlyErythroid36.2
CD8+_Tcells43.15
CardiacMyocytes36.15
Caudatenucleus35
Cerebellum36.9
CerebellumPeduncles102.45
CiliaryGanglion69.45
CingulateCortex87.15
Colorectaladenocarcinoma33.9
DorsalRootGanglion72.15
FetalThyroid39.85
Fetalbrain41.25
Fetalliver29.3
Fetallung28.55
GlobusPallidus94.15
Heart37.95
Hypothalamus43.15
Kidney32.1
Leukemia_chronicMyelogenousK-56233.5
Leukemia_promyelocytic-HL-6032.25
Leukemialymphoblastic(MOLT-4)27.95
Liver50.65
Lung39.1
Lymphnode32
Lymphoma_burkitts(Daudi)55.35
Lymphoma_burkitts(Raji)55.35
MedullaOblongata53.8
OccipitalLobe62.85
OlfactoryBulb44.95
Ovary29.75
Pancreas31.25
PancreaticIslet38.8
ParietalLobe67.6
Pituitary44.95
Placenta42.5
Pons88.85
PrefrontalCortex51.1
Prostate44.95
Salivarygland34.1
SkeletalMuscle44.25
Skin36.65
SmoothMuscle35.6
Spinalcord43.8
SubthalamicNucleus114.8
SuperiorCervicalGanglion74.05
TemporalLobe34.5
Testis47.7
TestisGermCell264.1
TestisIntersitial308.05
TestisLeydigCell133.6
TestisSeminiferousTubule111.5
Thalamus39.65
Thymus25
Thyroid36.85
Tongue37.5
Tonsil37.9
Trachea32.2
TrigeminalGanglion39.85
Uterus29.15
UterusCorpus42
WholeBlood32.35
Wholebrain30.1
colon35.3
pineal_day139.64
pineal_night99.18
retina38.575
small_intestine23.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1966_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.89 ± 0.42
Basal Forebrain5.91 ± 0.33
Basal Part of Pons6.14 ± 0.29
Cerebellar Cortex5.71 ± 0.23
Cerebellar Nuclei5.6 ± 0.44
Claustrum6.18 ± 0.49
Epithalamus5.92 ± 0.45
Frontal Lobe5.85 ± 0.37
Globus Pallidus5.23 ± 0.24
Hypothalamus5.88 ± 0.31
Insula6.01 ± 0.34
Limbic Lobe5.86 ± 0.39
Mesencephalon5.75 ± 0.39
Myelencephalon5.82 ± 0.43
Occipital Lobe5.83 ± 0.43
Parietal Lobe5.9 ± 0.3
Pontine Tegmentum5.9 ± 0.45
Striatum5.88 ± 0.49
Subthalamus5.62 ± 0.7
Temporal Lobe6.03 ± 0.32
Thalamus6 ± 0.3
White Matter5.68 ± 0.25
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Myo9aCBCerebellum7.38
7.5
Myo9aCTXCerebral cortex56.85
41.42
Myo9aHIPHippocampal region33.1
41.66
Myo9aHPFHippocampal formation33.05
33.86
Myo9aHYHypothalamus8.44
6.75
Myo9aLSXLateral septal complex20.73
15.18
Myo9aMBMidbrain13.69
12.2
Myo9aMYMedulla8.78
8.25
Myo9aOLFOlfactory bulb38.13
29.45
Myo9aPPons9.67
9.05
Myo9aPALPallidum14.29
13.06
Myo9aRHPRetrohippocampal region32.63
24.37
Myo9asAMYStriatum-like amygdalar nuclei19.43
13
Myo9aSTRStriatum27.59
19.56
Myo9aSTRdStriatum dorsal region28.63
20.66
Myo9aSTRvStriatum ventral region29.56
19.92
Myo9aTHThalamus18.32
16.96
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved