Annotation Detail for NAGA
Basic Information Top
| Gene Symbol: | NAGA ( D22S674,GALB ) |
|---|---|
| Gene Full Name: | N-acetylgalactosaminidase, alpha- |
| Band: | 22q13.2 |
| Quick Links | Entrez ID:4668; OMIM: 104170; Uniprot ID:NAGAB_HUMAN; ENSEMBL ID: ENSG00000198951; HGNC ID: 7631 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.75372
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 5 / 62319 | 80 |  |
| fetus | 27 / 564012 | 47 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 128 / 1939121 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 3 / 12794 | 234 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 9 / 82823 | 108 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 18 / 263845 | 68 | |
| glioma | 7 / 106883 | 65 | |
| head and neck tumor | 6 / 136302 | 44 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 8 / 97250 | 82 | |
| normal | 150 / 3360307 | 44 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 7 / 104616 | 66 | |
| primitive neuroectodermal tumor of the CNS | 33 / 125680 | 262 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 19 / 124949 | 152 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 1 / 29757 | 33 | |
| blood | 3 / 123478 | 24 | |
| bone | 9 / 71655 | 125 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 23 / 1100989 | 20 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 10 / 211054 | 47 | |
| heart | 4 / 89626 | 44 | |
| intestine | 14 / 234472 | 59 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 2 / 24145 | 82 | |
| liver | 5 / 207743 | 24 | |
| lung | 17 / 336974 | 50 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 8 / 153271 | 52 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 14 / 214812 | 65 | |
| parathyroid | 4 / 20539 | 194 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 49 / 280825 | 174 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 22 / 210574 | 104 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 5 / 330442 | 15 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 1 / 51780 | 19 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 202944_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 50.5 | |
| Adipocyte | 4.85 | |
| AdrenalCortex | 5 | |
| Adrenalgland | 4.1 | |
| Amygdala | 5.2 | |
| Appendix | 4.8 | |
| AtrioventricularNode | 3.65 | |
| BDCA4+_DentriticCells | 281.1 | |
| Bonemarrow | 9.8 | |
| BronchialEpithelialCells | 4.8 | |
| CD105+_Endothelial | 5.7 | |
| CD14+_Monocytes | 469.7 | |
| CD19+_BCells(neg._sel.) | 5.3 | |
| CD33+_Myeloid | 353 | |
| CD34+ | 14.3 | |
| CD4+_Tcells | 6.5 | |
| CD56+_NKCells | 42.05 | |
| CD71+_EarlyErythroid | 8.7 | |
| CD8+_Tcells | 4.85 | |
| CardiacMyocytes | 6.1 | |
| Caudatenucleus | 4.35 | |
| Cerebellum | 3.9 | |
| CerebellumPeduncles | 5.45 | |
| CiliaryGanglion | 3.35 | |
| CingulateCortex | 5 | |
| Colorectaladenocarcinoma | 4.9 | |
| DorsalRootGanglion | 3.65 | |
| FetalThyroid | 4.6 | |
| Fetalbrain | 4.9 | |
| Fetalliver | 4.2 | |
| Fetallung | 4.6 | |
| GlobusPallidus | 3.5 | |
| Heart | 6.1 | |
| Hypothalamus | 5.35 | |
| Kidney | 6.05 | |
| Leukemia_chronicMyelogenousK-562 | 4.6 | |
| Leukemia_promyelocytic-HL-60 | 4.3 | |
| Leukemialymphoblastic(MOLT-4) | 3.95 | |
| Liver | 6.35 | |
| Lung | 6.95 | |
| Lymphnode | 5.8 | |
| Lymphoma_burkitts(Daudi) | 6.25 | |
| Lymphoma_burkitts(Raji) | 6.8 | |
| MedullaOblongata | 4.45 | |
| OccipitalLobe | 4.35 | |
| OlfactoryBulb | 3.9 | |
| Ovary | 3.5 | |
| Pancreas | 3.9 | |
| PancreaticIslet | 5.2 | |
| ParietalLobe | 5.1 | |
| Pituitary | 5.75 | |
| Placenta | 15.3 | |
| Pons | 4.6 | |
| PrefrontalCortex | 6.15 | |
| Prostate | 5.8 | |
| Salivarygland | 3.9 | |
| SkeletalMuscle | 5.55 | |
| Skin | 3.65 | |
| SmoothMuscle | 5.5 | |
| Spinalcord | 6.45 | |
| SubthalamicNucleus | 4.4 | |
| SuperiorCervicalGanglion | 5.45 | |
| TemporalLobe | 4.3 | |
| Testis | 4.2 | |
| TestisGermCell | 4.2 | |
| TestisIntersitial | 4.1 | |
| TestisLeydigCell | 4.75 | |
| TestisSeminiferousTubule | 4.1 | |
| Thalamus | 4.9 | |
| Thymus | 3.8 | |
| Thyroid | 6.25 | |
| Tongue | 4.7 | |
| Tonsil | 4.7 | |
| Trachea | 8.1 | |
| TrigeminalGanglion | 4.75 | |
| Uterus | 4.1 | |
| UterusCorpus | 4.35 | |
| WholeBlood | 118.5 | |
| Wholebrain | 4.2 | |
| colon | 5.35 | |
| pineal_day | 6.16 | |
| pineal_night | 6.02 | |
| retina | 6.575 | |
| small_intestine | 7.1 | |
- Probe name: CUST_9444_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.39 ± 0.48 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.29 ± 0.3 | |
| Basal Part of Pons | 4.96 ± 0.43 | |
| Cerebellar Cortex | 5.13 ± 0.33 | |
| Cerebellar Nuclei | 5.59 ± 0.44 | |
| Claustrum | 5.53 ± 0.58 | |
| Epithalamus | 5.93 ± 0.35 | |
| Frontal Lobe | 5.09 ± 0.52 | |
| Globus Pallidus | 6.37 ± 0.38 | |
| Hypothalamus | 5.34 ± 0.57 | |
| Insula | 5.19 ± 0.46 | |
| Limbic Lobe | 5.17 ± 0.49 | |
| Mesencephalon | 5.25 ± 0.57 | |
| Myelencephalon | 5.28 ± 0.51 | |
| Occipital Lobe | 5.38 ± 0.49 | |
| Parietal Lobe | 5.16 ± 0.42 | |
| Pontine Tegmentum | 5.32 ± 0.42 | |
| Striatum | 5.31 ± 0.46 | |
| Subthalamus | 5.09 ± 0.11 | |
| Temporal Lobe | 5.11 ± 0.45 | |
| Thalamus | 5.3 ± 0.35 | |
| White Matter | 6.2 ± 0.49 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Naga | CB | Cerebellum | 8.48 | |
| 11.85 | | |||
| Naga | CTX | Cerebral cortex | 0.68 | |
| 0.83 | | |||
| Naga | HIP | Hippocampal region | 5.34 | |
| 5.49 | | |||
| Naga | HPF | Hippocampal formation | 6.77 | |
| 6.36 | | |||
| Naga | HY | Hypothalamus | 3.12 | |
| 4.41 | | |||
| Naga | LSX | Lateral septal complex | 0.5 | |
| 0.72 | | |||
| Naga | MB | Midbrain | 1.14 | |
| 2.25 | | |||
| Naga | MY | Medulla | 1.6 | |
| 3.16 | | |||
| Naga | OLF | Olfactory bulb | 4.02 | |
| 3.61 | | |||
| Naga | P | Pons | 1.88 | |
| 2.79 | | |||
| Naga | PAL | Pallidum | 0.55 | |
| 0.63 | | |||
| Naga | RHP | Retrohippocampal region | 10.1 | |
| 8.15 | | |||
| Naga | sAMY | Striatum-like amygdalar nuclei | 1.62 | |
| 1.63 | | |||
| Naga | STR | Striatum | 1.1 | |
| 1.35 | | |||
| Naga | STRd | Striatum dorsal region | 1.13 | |
| 1.31 | | |||
| Naga | STRv | Striatum ventral region | 0.9 | |
| 1.55 | | |||
| Naga | TH | Thalamus | 1.4 | |
| 1.54 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| NAGAB_HUMAN_0 | 0 | 0 | 0 | RFPHGIPFLADYVHSLGLK | PRIDE |
| NAGAB_HUMAN_267 | 20 | 267 | 286 | AQMALWTVLAAPLLMSTDLR | PRIDE |
| NAGAB_HUMAN_287 | 17 | 287 | 303 | TISAQNMDILQNPLMIK | PRIDE |
| NAGAB_HUMAN_304 | 11 | 304 | 314 | INQDPLGIQGR | PRIDE |
| NAGAB_HUMAN_334 | 10 | 334 | 343 | ASALVFFSCR | PRIDE |
| NAGAB_HUMAN_96 | 19 | 96 | 114 | RFPHGIPFLADYVHSLGLK | PRIDE |
| PAp00024713 | 17 | 69 | 85 | DMGYTYLNIDDCWIGGR | Peptide Atlas |